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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgttatactcccaaattctttttagtttttcttgtctatgcatttctcttgctgttatcagtgcaggagttgattttatgtttcttgtggcctcaaatcag

Basic information

species Arabidopsis thaliana
transcript AT5G26830.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 15
TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgttatactcccaaattctttttagtttttcttgtctatgcatttctcttgctgttatcagtgcaggagttgattttatgtttcttgtggcctcaaatcag
||||| ||||| ||||||||||| || || ||||||||||||||||  || ||||||||| ||| |||||||||||||||||| ||||| |||||| | | ||    ||     | | ||||| |    |||  |   | |||    || |  | |||  | || ||  |||  | | || || |  |     
TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtt-tgcacc----tttcagctggattttcattcacatgattcagttttg--aataacttttcagctgatggttggatgaatgtggttgcttgcag----

upper sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 15
TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgtt-atactcccaaattctttttagtttttcttgtctatgcatttctcttgctgttatcagtgcaggagttgattttatgtttcttgtggcctcaaatcag
||||| ||||| ||||||||||| ||||| ||||||||||||||||  || ||||||||| ||  |||||||||||||||||| ||||| ||||||   |||    |  |   |||   ||  ||||   || || || |        || |  | |||  | || ||  |||  ||| || ||||  |     
TTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactgttcagctagatttgcattcacttg---attcagttttg-----aataacttttcagctgatggttggatgaatctggttgcctgcag----

upper sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 16
TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgtt-atactcccaaattctttttagtttttcttgtctatgc-atttctcttgctgttatcagtgcaggagttgattttatgtttcttgtggcctcaaatcag
 | || ||||| |||||||| |||||||| |||||||||||||| |  |||||||||||| | | |||||||||||||||||| || ||||||||| ||  |    | ||  | ||  |  |||||   | |||     | ||||   ||    |||||| | | | |||||  | |    |    |     |||
ATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTTTCTGATGCATTAAGTAGGAAATTCCAGTGTGCAACATTACAGgtttatcatgttcacttgctcttgttcattctttcgtgtgctgcaacacttgtgctttcttgtgcagaattaggttttaattgttggataatgtgcttgcag

upper sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv19s0015g00470.t01 (Vitis vinifera), 5'ss of exon 16
TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgttatactcccaaattctttttagtttttcttgtctatgc-atttctcttgctgttatcagtgcaggagttgattttatgtttcttgtggcctcaaatcag
 | || ||||| || |||||||||||||| |||||||| ||||| |  |||||||||||| | |||||||||||||||||||| || |||||||||   |     || |   |||  || |||||   | |||   | || |||   || |  |||| | | | | |||||  |      |    |     |||
ATAAATGAAGGGGACGGTGCATTTTATGGACCAAAGATTGACATTAGTGTTTCTGATGCATTAAATAGGAAATTCCAGTGTGCAACATTACAGgtttatcatgttaacttgctttttttattctttagtgtgctgctacttttgtactttttggtgcggaattaggttttaattagtggataatgtggttgcag

upper sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: PP1S400_36V6.1 (Physcomitrella patens), 5'ss of exon 16
TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgttatactcccaaattctttttagtttttcttgtctatgcatttctcttgctgttatcagtgcaggagttgattttat-gtttcttgtggcctcaaatcag
 | || ||||  |||||||| |||||||| |||||||| |||||||| |||| ||||||| |||| || || || |||||||||||  | |||||       | ||||| ||     | ||   |         ||  | | | || | | ||   |    | ||||| ||   ||       | |||  ||  
ATTAATGAAGCGGATGGTGCCTTTTATGGACCAAAGATTGACATCACCGTTTTTGATGCATTGAAGAGAAAGTTTCAGTGTGCTACAATCCAGgtgggtaggctaaattgttgcatttattgaataatctcatgttattatggttgatcttag-aaattgttagatttcatcagttacaactccgtcatttcta

upper sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: EFJ07136 (Selaginella moellendorffii), 5'ss of exon 17
TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgttatactcccaaattctttttagtttttcttgtctatgcatttctcttgctgttatcagtgcaggagttgattttatgtttcttgtggcctcaaatcag
 ||||||||||||||||||| ||||| || || ||||| ||||||  ||| ||||||||| |||| ||||| |||||||| || ||  | |||||  |  |  ||     ||| |  ||||||||    | |  ||| | ||    |  | |     | ||                                
ATGAACGAAGGAGATGGTGCCTTTTACGGGCCTAAGATTGACATCCAAGTATCTGATGCACTGAACAGGAAGTTCCAGTGCGCAACAATTCAGgtcttgttttcagggcttttgtcttttttctt-ctaacgtgttttttttatcttcgtgatctacgcag--------------------------------

upper sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: EFJ09242 (Selaginella moellendorffii), 5'ss of exon 17
TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgttatactcccaaattctttttagtttttcttgtctatgcatttctcttgct--gttatcagtgcaggagttgattttatgtttcttgtggcctcaaatcag
 ||||||||||||||||||| ||||| || || ||||| ||||||  ||| ||||||||| | || || || |||||||| || ||  | |||||  |     ||     |||    |||||  | |  | |  ||| | |  ||  || |||   ||||                                   
ATGAACGAAGGAGATGGTGCTTTTTACGGGCCTAAGATTGACATCCAAGTATCTGATGCACTCAACAGAAAGTTCCAGTGCGCAACAATTCAGgtcttgtcttcagggcttttgcctttttttcttttaacgtttttttttatcttcgtgatctacgcag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164106394|gb|ES018144.1|ES018144
EST:     CAATGAATAGGAAATTCCAGTGTGCTACTTTACAG                         TTTGATTTTCAACTTCCGATTCGCTTCAACTTGGAATATGCAGCTGAGGAT
genomic: CAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgttatactcc ... ctcaaatcagCTTGATTTTCAACTTCCGATTCGCTTCAACTTGGAATACGCAGCTGAGGAT