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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGCTCGGCAATCTGAAAATGCCATGGCATATGATAATGCTGTATCAGCCGTGGGAAAGATCTGCCAATTTCACCGTGATAGTATTGATTCTTCTCAGgtagattataatagttattttggtttcgccatcgtacccatacatgtggttggttttgatgattcacaagttaccttgttttggttttattag

Basic information

species Arabidopsis thaliana
transcript AT5G19820.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19820.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA05G28950.1 (Glycine max), 5'ss of exon 19
AAATGCTCGGCAATCTGAAAATGCCATGGCATATGATAATGCTGTATCAGCCGTGGGAAAGATCTGCCAATTTCACCGTGATAGTATTGATTCTTCTCAGgtagat-tataatagttattttggtttcgccatcgtacccatacatgtggttggttttgatgatt--cacaagttaccttgttttggttttattag---------------------------------------------------------
 |||||||  || || || ||||  ||||||||||| |||||||| || ||  ||||||| || ||||||||||| ||||| |||||||||||| | |||||   |  ||| |     |||     | ||| | ||     |   | | | |  | ||  | |||   |  |   |   | | |  || | ||| |                                                         
TAATGCTCTTCATTCAGATAATGTAATGGCATATGACAATGCTGTTTCCGCTTTGGGAAAAATTTGCCAATTTCATCGTGACAGTATTGATTCTGCCCAGgtcagtacatattttccgtttataacttgcctttgtggttttggttcttgattatgtttgtcattattatgatcaattctttctgagtctgatttgttgtttttaggttgagatgatggttaatatttttgtaatgttctgtcatgtttgcag

upper sequence: AT5G19820.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA08G12120.1 (Glycine max), 5'ss of exon 17
AAATGCTCGGCAATCTGAAAATGCCATGGCATATGATAATGCTGTATCAGCCGTGGGAAAGATCTGCCAATTTCACCGTGATAGTATTGATTCTTCTCAGgt------agattataatagtt---attttggtttcgccatcgtacccatacatgtggttggttttgatgattcacaagtt----accttgttttggttttattag-----------------------------------------------
 |||||||  || || || ||||  ||||||||||| ||||| || || ||  ||||||| || ||||||||||| ||||| |||||||||||| | |||||      | ||| |    |||   |  ||| ||| |   |  |     | |||   ||| ||  | || ||   ||| |     |   ||||||| | || ||||                                               
TAATGCTCTTCATTCAGATAATGTAATGGCATATGACAATGCCGTTTCCGCTCTGGGAAAAATTTGCCAATTTCATCGTGACAGTATTGATTCTGCCCAGgtcagtacatattttccctgtttataacttgcttttgtggttttgattcttcattatgtttgtcattattatgatcaattctttgagtctgttttgttgtttttaggttgagatgatagttaatatttttgtaatgttctgttatgtttgcag

upper sequence: AT5G19820.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 17
AAATGCTCGGCAATCTGAAAATGCCATGGCATATGATAATGCTGTATCAGCCGTGGGAAAGATCTGCCAATTTCACCGTGATAGTATTGATTCTTCTCAGgtagattataatagttattttggtttcgccatcgtacccatacatgtggttggttttgatgattcacaagttacct---tgttttggttttattag------------
 ||||| | |||| | || ||||  |||||||||||||||||||| || ||  | ||||| || ||||| ||||| ||||| |||||||||||  ||||||||| ||     | || | |          ||| || | |  ||   ||||| || |  |   |||  |  |||     | ||        |||              
TAATGCACTGCAACCAGATAATGTAATGGCATATGATAATGCTGTTTCTGCTCTAGGAAAAATTTGCCAGTTTCATCGTGACAGTATTGATTCAGCTCAGgtagttt----cacttttctcaacca---tatcatatctaagcaca-ggttgattatattttgtcatcatctactcatgtattccaacaaaattgcctaaaaaattgg