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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAGgtatgctgttcatgagattctagagtcattcatattaatagagctgatgcaatgatgagttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G12370.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12370.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA07G05160.1 (Glycine max), 5'ss of exon 15
CCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAGgtatgctgttcatgagattctagagtcattcatat---taatagagctgatgcaatg--atgagttcttgcag------------------------
|| || ||||||||| || ||||||||||  | |||||||||||||||||||| ||| | |  |  | | ||| || || |||||||||   | |||       |||| ||   |   |||||   |                        
CCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaat-gtcacattttacag-cattcatatacttgataccttcagtgcattggagttcattcttctggggtcattctctgtctcttttgcag

upper sequence: AT5G12370.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA16G01660.1 (Glycine max), 5'ss of exon 15
CCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAGgtatgctgttcatgagattctagagtcattcatattaatagagctgatgcaatgatgagttcttgcag----------------------------
|| || ||||||||| || ||||||||||  | |||||||||||||||||||| ||| | |  |  | | ||| |  || |||||||||   |    ||   |   |   |||||| | |                              
CCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaat-gtcacatttttcag-cattcatatatttgttccttcagtgttttggagttcattcttctggggccatcctctgtctcttttgcag

upper sequence: AT5G12370.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 15
CCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAGgtatgctg-ttcatgagattctagagtcattcatattaatagagct-gatgcaatgatgagttcttgcag---------------------------
||  | || |||||| ||||||| |||||| | |||||||||||||||||||| ||| | || || ||     |      |  |   | | | | ||  | |  ||| | ||| | |||  ||                            
CCTACTACCCTTGCAACCAATGTAAAAGCTGTGTTTACTTGCCTGCTAGACCAAgtaagttggttgatttctcttccacattgtggttttcagttgaatttggggcattcatgtgatctgtcatggattctaagatatttttatttttcag