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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGCGGACCAGAGACTCACTCGTGACCTGGAAAAGTTAACCGCTGACTTGTCTGGACTTCTTACTGGAATGGTAAAGCCATCGGTTGACATTCTCTGgtacgtacgctatgttggattgatttctaatatttgtttcatggttcttggtttgaattatcataatgcaaaaaaaaaacaaattgaag

Basic information

species Arabidopsis thaliana
transcript AT4G39850.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39850.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA05G31270.1 (Glycine max), 5'ss of exon 15
TTGATGCGGACCAGAGACTCACTCGTGACCTGGAAAAGTTAACCGCTGACTTGTCTGGACTTCTTACTGGAATGGTAAAGCCATCGGTTGACATTCTCTGgtacgtacgctat--gttggattgatttctaatatttgtttcatggttcttggtt--------tgaattatcataatgcaaaaaaaaaacaaattgaag-------------------------------------------
||||||| || |||||  | |||| |||| |||| ||||||||  | |||||||| |||||  | |||||||||||||||||||| || || ||| | ||||  |||    ||  |    || || || | || ||  | |  ||  | ||  ||        | ||||| |||| ||    |||| |   | |                                                
TTGATGCTGATCAGAGGATAACTCATGACTTGGAGAAGTTAACAACAGACTTGTCAGGACTGGTCACTGGAATGGTAAAGCCATCTGTGGATATTTTGTGgtgagtaattcatttgcaaaatagagttattatgttactatggtgtattttacttgtacatggtcaattaacatattgatgcaaaatagttattatgctctttgtttttatttacttatcaagtactttcgttattctaaag

upper sequence: AT4G39850.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 13
TTGATGCGGACCAGAGACTCACTCGTGACCTGGAAAAGTTAACCGCTGACTTGTCTGGACTTCTTACTGGAATGGTAAAGCCATCGGTTGACATTCTCTGgtacgtacgcta--tgttggattgatttctaatatttgtttcatggttcttggtttgaattatcataatgcaaaaaaaaaacaaattgaag-------------------------------------
|||| || || |||||  | |||| |||| |||| ||||||||  | |||||||| |||||  | |||||||||||||||||||| || || ||| | ||||  ||||   |  ||    || || || | || ||  | |  ||  | ||  |   |  |     | |   | |   |  ||   |                                         
TTGACGCTGATCAGAGGATAACTCATGACTTGGAGAAGTTAACAACAGACTTGTCAGGACTGGTCACTGGAATGGTAAAGCCATCTGTGGATATTTTGTGgtgagtacttcatttgcaaaatagagttattatgttactatggtgtattttactagtacatggtgaattaacatattgatgcatgctctgtctttatttacttactgagtactttcattactctaaag