1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
CGTAGCATGTTCATCCGCAGATGGGCGCACTTTGTTGGAATCATCCAAAACCTCCTTAGATAAAGGCAAACTGGAGGATGCTGTCAATTATGGCACCAAGgtataactgatatttttctcactcctctttttatatactaaccatgtaacggatgctttctcttgagtagtctaaatacatttgtcccttctttcccaaa...
species | Arabidopsis thaliana |
transcript | AT4G28080.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTATGGCACCAAG GCATTGGCCAAGCTTGTAGCTGTGTGCGGCCCATATCATAGAATGACCGCTEST: gi|125030904|gb|EL103173.1|EL103173
genomic: TTATGGCACCAAGgtataactga ... aactccatagGCATTGGCCAAGCTTGTAGCTGTGTGCGGCCCATATCATAGAATGACCGCT
EST: CCTCCTTAGATAAAGGCAAACTGGAGGATGCTGTCAATTATGGCACCAAG GCATTGGCCAAGCTTGTAGCTGTGTGCGGCCCATATCATAGAAEST: gi|116445041|gb|EG487633.1|EG487633
genomic: CCTCCTTAGATAAAGGCAAACTGGAGGATGCTGTCAATTATGGCACCAAGgtataactga ... aactccatagGCATTGGCCAAGCTTGTAGCTGTGTGCGGCCCATATCATAGAA
EST: CCTCCTTAGATAAAGGCAAACTGGAGGATGCTGTCAATTATGGCACCAAG GCATTGGCCAAGCTTGTAACTGTGTGCGGCCCATATC
genomic: CCTCCTTAGATAAAGGCAAACTGGAGGATGCTGTCAATTATGGCACCAAGgtataactga ... aactccatagGCATTGGCCAAGCTTGTAGCTGTGTGCGGCCCATATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTAGCATGTTCATCCGCAGATGGGCGCACTTTGTTGGAATCATCCAAAACCTCCTTAGATAAAGGCAAACTGGAGGATGCTGTCAATTATGGCACCAAGgtataactgatatttttctcactcctctttttatatactaaccatgtaacggatgctttctcttgagtagtctaaatacatttgtcccttctttcccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctttccc