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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGCTGAGAAAGCCAGTTTCATCCTCCTCACAGGCCCTAATATGGGTGGAAAATCAACCCTTCTTCGCCAAGTTTGCTTGGCTGTAATCTTGGCTCAGgtaagctatcatttgaaaaaactttgtaggcaatgggctttgacccgtttaattttgatgaaagaaactcaagcaatgatgatcttttcacag

Basic information

species Arabidopsis thaliana
transcript AT4G02070.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02070.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA19G40350.1 (Glycine max), 5'ss of exon 16
TGGTGCTGAGAAAGCCAGTTTCATCCTCCTCACAGGCCCTAATATGGGTGGAAAATCAACCCTTCTTCGCCAAGTTTGCTTGGCTGTAATCTTGGCTCAGgt-aagctatca--tttgaaaaaactttgtaggcaatgggctttgac---ccgtttaattttgatgaaagaaactcaagcaatgatgatcttttcacag-
|||| | ||  | || || || || || || ||||| ||||| |||||||| || |||||||||||||| |||||||||||| |||| || ||||| ||||| ||||| |||  | |    | | |||  |     |   ||||| |   |  |||  ||| | ||   | |      |        || |      || 
TGGTTCAGATCATGCTAGCTTTATTCTTCTAACAGGTCCTAACATGGGTGGGAAGTCAACCCTTCTTCGTCAAGTTTGCTTGACTGTGATTTTGGCCCAGgtgaagctttcaagtcttgttacatttttcattatctattctttgcctttcttttttgtttgggtgggggtaggggcggagccagaaatttggcttgagg

upper sequence: AT4G02070.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv07s0005g01370.t01 (Vitis vinifera), 5'ss of exon 16
TGGTGCTGAGAAAGCCAGTTTCATCCTCCTCACAGGCCCTAATATGGGTGGAAAATCAACCCTTCTTCGCCAAGTTTGCTTGGCTGTAATCTTGGCTCAGgtaagctatcatttgaaaaaactttgtaggcaatgggctttgacccgtttaattttgatgaaagaaactcaagcaatgatgatcttttcacag
|||| ||||  | ||| | || ||||| ||||| || || || ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| |     ||      ||||         ||   |||  |  | |  ||||        | || |    ||    || |   |||  ||
TGGTTCTGATCATGCCTGCTTTATCCTTCTCACTGGTCCAAACATGGGTGGAAAATCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTTATTTTGGCCCAGgtaagattcttgtttttctgactt-------ggtgatttttctcttgatctattt-------ggtaattt---cacctttggttccttcctag