Sequence
atgc intronic sequence ATGC exonic sequenceGGTGGAAGCGCCGATGCTTTGGCGTTATACTTCGGAGAAGATCCAGCTCGTGTCCCATTTGAGCAAGgtaacaatttaatgcaaactcactattatggtttcttctcttcttacatcttattttctatacattatttccatttgttttttggagttgtgtcctttatgtccctgaccttaagatataccaaatctttgcgtttgatttgaatctgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G32400.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G32400.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA17G33930.1 (Glycine max), 5'ss of exon 16
GGTGGAAGCGCCGATGCTTTGGCGTTATACTTCGGAGAAGATCCAGCTCGTGTCCCATTTGAGCAAGgtaacaatttaatgcaaactcactattatggtttcttctcttcttacatcttattttctatacattatttccatttgttttttggagttgtgtcctttatgtccctgaccttaagatataccaaatctttgcgtttgatttgaatctgcag
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GGTAGAAATGCAGATGCATTGGCTTTGTACTTTGGTGAAGATCCAGCACGTGTCCCATTTGAACAAGgtaactagctatttttaatt----agtctacattatcattttcccatgttctctttcaagaactatatgtttaagaattggttgtgg--atctcaattaggcatca---------------------------------------------
upper sequence: AT3G32400.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv04s0008g06530.t01 (Vitis vinifera), 5'ss of exon 19
GGTGGAAGCGCCGATGCTTTGGCGTTATACTTCGGAGAAGATCCAGCTCGTGTCCCATTTGAGCAAGgtaacaatttaatgcaaactcactattatggtttcttctcttcttacatcttattttctatacattatttccatttgttttttggagttgtgtcctttatgtccctgaccttaagatataccaaatctttgcgtttgatttgaatctgcag
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GGTAGAAATGCAGATGCATTGGCTCTTTATTTTGGAGAAGATCCAGCTCGTTGCCCATTTGAGCAAGgta----ttttgggtcagttggtttttat----tttgaaataccctcgtcataa---ctacgcagaa-----aaaaataaaaaataactataacaataaaggacaggagaaaagaa-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124858012|gb|EH942449.1|EH942449EST: TTTGGCGTTATACTTCGGAGAAGATCCAGCTCGTGTCCCATTTGAGCAAG TTGTATCCACTCTGCAAAACTTTGTTAGAATATTTGTGCGATCACACGAGG
genomic: TTTGGCGTTATACTTCGGAGAAGATCCAGCTCGTGTCCCATTTGAGCAAGgtaacaattt ... gaatctgcagTTGTATCCACTCTGCAAAACTTTGTTAGAATATTTGTGCGGTCACACGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGGAAGCGCCGATGCTTTGGCGTTATACTTCGGAGAAGATCCAGCTCGTGTCCCATTTGAGCAAGgtaacaatttaatgcaaactcactattatggtttcttctcttcttacatcttattttctatacattatttccatttgttttttggagttgtgtcctttatgtccctgaccttaagatataccaaatctttgcgtttgatttgaatctgcag
- - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG