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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTTATTTGTTGGCCAATGCCTTCATCAGTGTGTTAACTATTGTTTCCAAATTTCCCTTCCAAGCGTCGGCCCTTGTCCACACCACTGTTAAATCAAGgtatttgctttgctttcatcactttttttggttcattgcaaacctattcacctctgtccagaaataagtgaataagcgtcaatgtgttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G27325.2
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164222773|gb|ES035892.1|ES035892
EST:     AAATTTCCCTTCCAAGCGTCGGCCCTTGTCCACACCACTGTTAAATCAAG                         GTGCCAAGCTTTGGAAAGAAACTATTCTCTTGCT
genomic: AAATTTCCCTTCCAAGCGTCGGCCCTTGTCCACACCACTGTTAAATCAAGgtatttgctt ... tgtgttgcagGTGCCAAGCTTTGGAAAGAAACTATTCTCTTGCT
EST: gi|124904318|gb|EH978398.1|EH978398
EST:     GGCCCTTGTCCACACCACTGTTAAATCAAG                         GTGCCAAGCTTTGGAAAGAAACTATTCTCTTGCTTTCCTTCATTGGTTTTC
genomic: GGCCCTTGTCCACACCACTGTTAAATCAAGgtatttgctt ... tgtgttgcagGTGCCAAGCTTTGGAAAGAAACTATTCTCTTGCTTTCCTTCATTGGTTTTC
EST: gi|164108014|gb|ES025304.1|ES025304
EST:     AAATTTCCCTTCCAAGCGTCGGCCCTTGTCCACACCACTGTTAAATCAAG                         GTGCCAAGCTTTGGAAAGAAACTATTCTCTTGCT
genomic: AAATTTCCCTTCCAAGCGTCGGCCCTTGTCCACACCACTGTTAAATCAAGgtatttgctt ... tgtgttgcagGTGCCAAGCTTTGGAAAGAAACTATTCTCTTGCT