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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTAAAAATGTGAACATCAATGTCGCTGTACAAACAGAAAATGGGCTCTACGTTCCTGTGGTCAAGgttagggagctcttgatacagttattaaccttcctctgcagaaacttgagatttctgaaaaactcagttcatctaattgcttgatttcag

Basic information

species Arabidopsis thaliana
transcript AT3G13930.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13930.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: LOC_Os06g01630.5 (Oryza sativa), 5'ss of exon 16
ATTTAAAAATGTGAACATCAATGTCGCTGTACAAACAGAAAATGGGCTCTACGTTCCTGTGGTCAAGgttagggagctcttgatacagttattaaccttcctctgcagaaacttgagatttctgaaaaactcagttcatctaattgcttgatttcag
||   | ||||||||||||||||| ||||||||||| ||  ||||  | |  ||||| ||  | | |||  |  |  | ||   |  |||       ||       |   | |    || | | |        |||  |  |               
ATACCACAATGTGAACATCAATGTTGCTGTACAAACTGAGGATGGCTTGTTTGTTCCCGTAATAAGGgtatgccatttatttccatggtt------tttttaaaaaaattattcagcatctttaacttgtattgtttttacag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125215224|gb|EL229364.1|EL229364
EST:     GAAAATGGGCTCTACGTTCCTGTGGTCAAG                         GACGCGGACAAGAAAGGACTGTCTACAATTGGAGAAGAGGTTCGATTCTTG
genomic: GAAAATGGGCTCTACGTTCCTGTGGTCAAGgttagggagc ... ttgatttcagGACGCGGACAAGAAAGGACTGTCTACAATTGGAGAAGAGGTTCGATTCTTG
EST: gi|125269990|gb|EL284075.1|EL284075
EST:     CTGTACAAACAGAAAATGGGCTCTACGTTCCTGTGGTCAAG                         GACGCGGACAAGAAAGGACTGTCTACAATTGGAGAAGAGGTTCGATTCTTG
genomic: CTGTACAAACAGAAAATGGGCTCTACGTTCCTGTGGTCAAGgttagggagc ... ttgatttcagGACGCGGACAAGAAAGGACTGTCTACAATTGGAGAAGAGGTTCGATTCTTG