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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGgtatgtatgaagtcaaacatatttctgaagatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttcatatttggtgttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G10550.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA10G34510.1 (Glycine max), 5'ss of exon 10
TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGgtatgtatgaagtcaaacatatttctgaa-gatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttca-tatttggtgttgcag
||| ||||| | |||||||| ||| ||||||||||||||| |||||||||||||||| |||||||| |    |  || || ||| |    | ||| |||  |   ||  |    || |||   |      | |  | |  | | |||  || | |||
TGGGTTGATTGTGTTTCACAACTATTGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGgtatgtttcc--ttgaatatttttgtatttgttttgatgcacggttttctttc-tagtaactttccttctagtaacttctactttttcatgatccag

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA20G33040.1 (Glycine max), 5'ss of exon 10
TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGgtatgtatgaagtcaaacatatttctgaa-gatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttca-tatttggtgttgcag
||| ||||| | ||||| ||  || | ||||| ||||||| |||||||||||||||| ||||||||||    |  || || ||| |    | ||| |||      ||  |    |  ||    |      | | || |  | | |||  || | |||
TGGGTTGATTGTGTTTCGCAATTATTACGGATATATCCTTTTGCTTTTGAGTTTTCTGCGgtatgtatcc--ttgaatatttttgtatttgttttgatgcatggttttctttc-tcgtatctttccttctagtagcttctactttttcatgatccag

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv13s0074g00300.t01 (Vitis vinifera), 5'ss of exon 16
TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGgtatgtatgaagtcaaacatatttctgaagatttcatgttcaact-tcttccagtaataatagtgtagtcatttgccttcatatttggtgttgcag-------
||| | ||| | || ||||| ||  ||||||||||||||| |||||||||||| ||  |||||||||  | || |||| | ||  |  |  |  |       | | || |    || | |   || | |   || |   |   |||  ||||  |        
TGGGTCGATTGTGTATCACAACTGTTGCGGATGTATCCTTTTGCTTTTGAGTTCTCCTCGgtatgtacta-gtaaaacttgttctttgatttcacggaacagattatcattgtatattcaacatgaaattgcttcctgactggtttattgtttgatgattcag