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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAGACTTTACCGTGCTCTTCCTTTCCTGTATGAACTGAGATGTGTGCTTGACTGGTCTTGCACAGCTACATCACTGACAATGTATGACTGGCTCAAGgtatgtcgtctgatcccatgcatttactttctggaacccttgctatgatcatggatcattcatgttagtttgaacatactgccaagggcttaagttttgttcgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G48060.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G48060.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: LOC_Os01g29230.1 (Oryza sativa), 5'ss of exon 6
TTACAGACTTTACCGTGCTCTTCCTTTCCTGTATGAACTGAGATGTGTGCTTGACTGGTCTTGCACAGCTACATCACTGACAATGTATGACTGGCTCAAGgtatgtcgtctgatcccatgcatttactttctggaacccttgctatgatcatggatcattcatgttagtttgaacatactgccaagggcttaagttttgttcgtttgcag
|| | | |||||||||||||| || ||| ||||||| ||| | ||||||||||| ||||| || ||| |||||||| | ||||||||||| ||||| ||||||  ||          || | |   ||| |   |||  |     |  |     |  |||        ||   | |||   |     | | || |||     |   ||  
TTTCCGGCTTTACCGTGCTCTGCCCTTCTTGTATGAGCTGCGGTGTGTGCTTGATTGGTCATGTACAACTACATCATTAACAATGTATGATTGGCTTAAGgtacatc---------tatacttgatcttccccaaactatcatggttgtttcaaaatattttgccatattaccatataggtctgcacgttgaaatttaagctgaaggcc-

upper sequence: AT2G48060.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GRMZM2G065388_T01 (Zea mays), 5'ss of exon 1
TTACAGACTTTACCGTGCTCTTCCTTTCCTGTATGAACTGAGATGTGTGCTTGACTGGTCTTGCACAGCTACATCACTGACAATGTATGACTGGCTCAAGgtatgtcgtctgatcccatgcatttactttctggaacccttgctatgatcatggatcattcatgttagtttgaaca--tactgccaagggcttaagttttgttcgtttgcag
 | | | || || |||||| | || ||| |||||||| || | ||||| ||||| |||||||||||| | |||||  | ||||||||||| ||||| |||||||||  || | | | |   ||||   ||||  |     |   |||    |    || |  | |||  ||||  |   | | | |   ||    ||     |         
CTTCCGTCTGTATCGTGCTTTACCATTCTTGTATGAATTGCGGTGTGTACTTGATTGGTCTTGCACAACCACATCTTTAACAATGTATGATTGGCTGAAGgtatgt-atccgctgcta-atatttttcttctacagttactag-atgtgtcttagccaatattattaaattgactagtcaattctagctgccatggtaccaat---------

upper sequence: AT2G48060.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv07s0104g00760.t01 (Vitis vinifera), 5'ss of exon 16
TTACAGACTTTACCGTGCTCTTCCTTTCCTGTATGAACTGAGATGTGTGCTTGACTGGTCTTGCACAGCTACATCACTGACAATGTATGACTGGCTCAAGgtatgtcgtc-tgat-cccatgcatttactttctggaacccttgctatgatcatggatcattcatgttagtttgaacatactgccaagggc-ttaagttttgttcgtttgcag
|||| ||||||| |||||||| || || || |||||| || ||||||| ||||||||||| |||||| | |||||  |||| |||||||||||||| |||||| ||  |  | ||   ||| |||    |  ||| ||  ||  |  |  |     | |  | |   || ||  |  || |  |    | | |||  ||  |           
TTACCGACTTTATCGTGCTCTGCCATTTCTTTATGAATTGCGATGTGTACTTGACTGGTCGTGCACAACCACATCTTTGACCATGTATGACTGGCTGAAGgtaagttattgtaatattcatccatagcatcactgaaagactcaccttacttg-aaacctctgacacta-ttgaattatgccactggtgtcattacattgag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163971463|gb|ES039029.1|ES039029
EST:     TTGACTGGTCTTGCACAGCTACATCACTGACAATGTATGACTGGCTCAAG                         TTGGAAGATGTAAATGCGAGTTTGTACCTTGTCAAATGCGA
genomic: TTGACTGGTCTTGCACAGCTACATCACTGACAATGTATGACTGGCTCAAGgtatgtcgtc ... tcgtttgcagTTGGAAGATGTAAATGCGAGTTTGTACCTTGTCAAATGCGA