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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATACAGCAGCTAGACCGGTGATTCTAGAACCTGTTATGCTGGTCGAGTTGAAAGTACCAACAGAGTTTCAGGGCACTGTTGCTGGTGACATCAACAAgtaaactctaaaaactctaaaccctttaacaataccatttctttctccttgtcctattagtataataagtcaaacttgtttcaatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G45030.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 12
GTTATACAGCAGCTAGACCGGTGATTCTAGAACCTGTTATGCTGGTCGAGTTGAAAGTACCAACAGAGTTTCAGGGCACTGTTGCTGGTGACATCAACAAgtaa--actctaaaaactctaaaccctttaacaataccatttctttctccttgtcctat-tagtataataagtcaaacttgtttcaatttcag
||||| ||||  | |||||||| ||  |||||||||||||||| || ||| |||||||||||||||| ||||||||  |||||||||||||||||||||||| |    |||  |   | | |||    ||    |   |  | ||     || ||  |  |||| | |||| ||| |                
GTTATGCAGCTTCCAGACCGGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACATCAACAAgtgagagttctttacttttttaactggatattg-tggtaaattttcagaattctctgacatagttttataactcatataaag-----------

upper sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 17
GTTATACAGCAGCTAGACCGGTGATTCTAGAACCTGTTATGCTGGTCGAGTTGAAAGTACCAACAGAGTTTCAGGGCACTGTTGCTGGTGACATCAACAAgtaaactctaaaaactctaaaccctttaacaataccatttctttctccttgtcctattagtataataagtcaaacttgtttcaatttcag----
| ||||||||||| | ||| |||||  | |||||||| ||||| || || |||||||  |||||||| ||||||||||||||| ||||||||||||| |||| |   ||   |  |     |     ||    | ||   |||||    |  |   |    || | ||   |||  ||| |  || |       
GCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATAAgtgagtgcttctatttactctctaccaaatgtcatcaacgctttcatactaactcctggaaatgaaaaaaaaaaaatgtctgcatctataatag