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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGGAGGAGACCTGACCCCTGCAAGAGCATTTACGTCACTCTCTCTCTTTGCTGTGCTTCGTTTCCCTCTCTTCATGCTTCCAAACATTATAACTCAGgtgatttcttaaatatgttgttgcaatgcatgtgtattaagtagaactgttagtgcttgtagtaactgtcgtttggttatcaaatccatgacttatatttcgaatttacatgctggagggtatccttgctggtgccagaaacagatgccgatgctgactagttttcacttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G34660.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34660.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 15
ACTTGGAGGAGACCTGACCCCTGCAAGAGCATTTACGTCACTCTCTCTCTTTGCTGTGCTTCGTTTCCCTCTCTTCATGCTTCCAAACATTATAACTCAGgtgatttcttaaatatgttgttgcaatgcatgtgtattaagtagaactgttagt-gcttgtagtaactgtcgtttggttatcaaatccatgacttatatttcgaatttacatgctggagggtatccttgctggtgccagaaacagatgccgatgctgactagttttcacttgtag
 |||||||| || ||||| ||||||||||||||||| ||||| ||||| ||| | |||||||| || ||||||||||||||||| || | |||||||||||| |  |     ||      |||||||     | | ||   | ||  |   ||  |  ||   |  |    ||||   ||     || ||   || |||| |   |                                                                     
GCTTGGAGGGGATCTGACACCTGCAAGAGCATTTACATCACTTTCTCTGTTTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtcaggtt----attctcctttgcaattttcttttgtttctttgattttgcagcaggatgccttctcctatgtttttgtactctctctat---ttgtattccctttc--------------------------------------------------------------------

upper sequence: AT2G34660.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA15G09900.1 (Glycine max), 5'ss of exon 15
ACTTGGAGGAGACCTGACCCCTGCAAGAGCATTTACGTCACTCTCTCTCTTTGCTGTGCTTCGTTTCCCTCTCTTCATGCTTCCAAACATTATAACTCAGgtgatttcttaaatatgttgttgcaatgcatgtgtattaagtagaactgttagt-gcttgtagtaactgtcgtttggttatcaaatccatgacttatatttcgaatttacatgctggagggtatccttgctggtgccagaaacagatgccgatgctgactagttttcacttgtag--
 |||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||| |||||||||| || ||||||||||||||||| || | |||||||||||| | || ||          |||||||     | | ||   | ||  |   ||  |  ||   || |    ||||  |  ||      |  | |||  | | | ||   ||   | | | | ||   |||||   |||          |  || || | |  ||||   |  ||   
GCTTGGAGGGGATCTGACACCTGCAAGAGCTTTTACATCACTTTCTCTGTTTTCTGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtaagttatt-----ctcctttgcaattttcttttgtttctttgattttgcagcaggatgccttatcctatgttttatactctctaataaaatttaattcttgcataagcagtgtagtgagaattaatgctg-caccaatgtagttcacttatcctaattctttttttgtcttaaag