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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATCGAAGCGCTACCTAATGTTCCATCACCTGACCTGGCATTCCGGTTGTACTTGCAATGTGCTGAGgtaaaactacgtacctgtttatttagtatgcacttgctcggtaaaatgctcacagatctttcctatttcatcag

Basic information

species Arabidopsis thaliana
transcript AT2G17790.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 16
ATTATCGAAGCGCTACCTAATGTTCCATCACCTGACCTGGCATTCCGGTTGTACTTGCAATGTGCTGAGgtaaaactacgtacctgtttatt------------tagtatgcacttgctcggtaaaatg--ctcacagatctttcctatttcatcag-
|  |||||  |  |  |   ||| |   | || ||  | ||||| | |||||||||||||||||||||||||     |  ||  || || ||            |  |||   ||  ||   |    ||   | |  | |  ||  | || ||| |  
ACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGgtacttgaatatatttggttgttagtgcatcaaaatgatatttcctaactatatttgctgattttattgtttctttttcttgcattaag

upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 16
ATTATCGAAGCGCTACCTAATGTTCCATCACCTGACCTGGCATTCCGGTTGTACTTGCAATGTGCTGAGgtaaaactacgtacctgtttat----ttagtatgcacttgctcggtaaaatgctcacag----atctttcctatttcatcag-
|  |||||  |  |  |   ||| |   |||| ||  | ||||| | |||||||||||||||||||||||||     |  ||  || ||||    | |  |||   || |      |  |||| |        | | |  | || ||| |  
ACCATCGAGACTTTGTCAGGTGTCCTGGCACCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGgtactggaatatatttggttatcacatcaaaatgatatttcctaactatttgctgattttgttgtttcttttcttgcattaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125108015|gb|EL161106.1|EL161106
EST:     CCGGTTGTACTTGCAGTGTGCTGAG                         GCTGCGGATAAGTGTGATGAAGAACCAATTGCATACGAATTTTTCACCCAG
genomic: CCGGTTGTACTTGCAATGTGCTGAGgtaaaactac ... atttcatcagGCTGCGGATAAGTGTGATGAAGAACCAATTGCATACGAATTTTTCACCCAG