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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTATTCAAACCTTGATGGCAACAGATCTCACGTCGTGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAAgtgagtaaattccttaagaaactttgtacttcagttcatcgtgctgcaaggcggggggattgctcattcttgtcctctctctctttccatttacaattttatctctttgtttgtgttcttattag

Basic information

species Arabidopsis thaliana
transcript AT2G07050.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07050.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 5'ss of exon 17
GTCTATTCAAACCTTGATGGCAACAGATCTCACGTCGTGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAAgtgagtaaattccttaagaaactttgtacttcagttcatcgtgctgcaaggcggggggattgctcattcttgtcctctctctctttccatttacaattttatctctttgtttgtgttcttattag
|| |||||||| |||||||||||||||||||| || || ||||| |||||||||||||| || ||||||| ||||||||| ||                | || |  || || | | ||| ||     || |  |  |     |||| | || |  | | | | |   || || |  ||||||    |||||   || |       
GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGGCTATGCTGGCTCTCATTGATGCTGGGCAGgt----------------acacatcatattttactacat-gtttgctaatgttgaagagggactcagtttt-tgttgtgtttatagtcagtttcctttttatagaattgttatcgtgc-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124710764|gb|EH802166.1|EH802166
EST:     TTGGTGCTGGGCAA                         GCTGAGGTAGACCGGAAACCACTACACCGGGCTGCAAGATACTTGATTAAT
genomic: TTGGTGCTGGGCAAgtgagtaaat ... ttcttattagGCTGAGGTAGACCGGAAACCACTACACCGGGCTGCAAGATACTTGATTAAT
EST: gi|116474686|gb|EG517278.1|EG517278
EST:     ACGTCGTGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAA                         GCTGAGGTAGACCGGAAACCACTACACCGGGCTGCAAGATACTTGATTAAT
genomic: ACGTCGTGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAAgtgagtaaat ... ttcttattagGCTGAGGTAGACCGGAAACCACTACACCGGGCTGCAAGATACTTGATTAAT
EST: gi|116474685|gb|EG517277.1|EG517277
EST:     ACGTCGTGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAA                         GCTGAGGTAGACCGGAAACCACTACACCGGGCTGCAAGATACTTGATTAAT
genomic: ACGTCGTGAATACAGCATGGGCTATGCTCGCACTCATTGGTGCTGGGCAAgtgagtaaat ... ttcttattagGCTGAGGTAGACCGGAAACCACTACACCGGGCTGCAAGATACTTGATTAAT