Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgtaacttactgacttctgtgtccactttatgattacag

Basic information

species Arabidopsis thaliana
transcript AT1G79990.5
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 16
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgt--aacttactgacttctgtgtccactttatgattacag
|| || || ||||||||  |||| || ||||||||||||||||| ||||| || ||||||||| | |||||| | |||||||| || |||||||  |    |  || |   |  ||  |||| |   | |  |||  || |     |||    | |    ||| |  || |||
GTCACCACGATGTATCACTTGGATCGCCCTATGTACTTGTTGGGATATCTAGCGAATCAAAGCCGAGTTTATCTTATTGACAAGGAATTCAAgtgtgtt--ttcttgataatactgcctgcttattgtctggtgttgaattcttgaactaacatatt---tttcttgttgcag

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 16
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgta--acttactgacttctgtgtccactttatgatt----acag
|| ||||||||||||||| |||| || ||||||||||||||||| ||| | || || |||||  | |||||| | |||||||| ||||| |||||      ||||||   |  |  | ||||  |  |  ||||||  |  |  | | |||| || | |    ||   |    ||||
GTCACTACAATGTATCATTTGGATCGCCCTATGTACTTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAAgta------tgttttctcgaaaacaatgcttcctttcctttgtagcatctgttaatttctctgactaacaaatagcttggtacag

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GRMZM2G086015_T01 (Zea mays), 5'ss of exon 1
--------GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgtaac--ttactgacttctgtgtccactttatgatt----acag
        || ||||||||||||||| |||| || ||||||||| ||||||| ||| | || || |||||  | |||||| | |||||||| ||||| |||||      ||||||   |  |  | ||||  |  |  |||||| |   |  | | |||| || | |    ||   |    ||||
ACTTACAGGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAAgta------tgttttctcgaaaacaatgcttcctttcctttgtagcatctgttaatttctctgactaacaaatagcttggtacag

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GRMZM2G095348_T01 (Zea mays), 5'ss of exon 16
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgtaac-----ttactgacttctgtgtccactttatgattacag-----
|| ||||||||||||||| |||| || ||||||||| | ||||| ||||| || || |||||  | |||||| | |||||||| ||||| ||||  ||     |||  ||   |  || | |  |  | |||||||||      |  | | ||||||| | |   ||| |           
GTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAAgtgcgc-----tttctctaaaacaat-gtttcctttcttttgtaacatctgctgttaatttctgtgactaacatataagcttgatacag

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgtaacttactgacttctgtgtccactttatgattacag-------
|||||||| |||| |||| ||||||| ||||||||||||||||| ||||| || || |||||  | ||||||||||||||||||||||| |||||||   |  || | ||   || |||   |    |   ||| ||    ||    | | | ||   ||    |||           
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 5
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgtaact-tactgacttctgtgtccactttatgattacag-------
|| |||||||||| |||| ||||||||||||||||||||||||| ||||| || |  ||||| | ||| |||||||| |||||||| ||||||||||  |||   |   |   || |||   ||        || |    | |||| || | |      ||| | | |           
GTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATAGACAAAGAATTCAAgtaagtggatcaatggtttgcattattcaaaatctctcaatgcagtggtcctgattttttttcttcttttttaactgtgttactcag

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 16
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgtaacttactgacttctgtgtccactttatgattacag
|| |||||||||| |||| ||||||||||||||||||||||||| ||||| || |  ||||| | ||| |||||||| |||||||| ||||||||||  |||   |   |   || |||   || |      || |     |    || | | |  ||| | | | | |||
GTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATGGACAAAGAATTCAAgtaagtggatcaatggtttgcattattcaaaatatctcaatgcagtaatcctgattattttttaactgttttact-cag

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 16
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgtaa----cttactgacttctgtgtccac---tttatgattacag
|||||||| |||| |||| ||||||| || |||||||||||||| ||||| || || |||||  | ||||||||||||||||||||||| |||||||   |  || | ||   || |||   |    |   ||| |     |||    |||| | |||  |    ||| |  |  |||
GTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcagtaatcttgactacttttctgtttatcaattttttttctcag

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgcta-acaatgttttgtaacttactgacttctgtgtccactttatgattacag-------------
||||| ||||||| |||| ||||||| |||||||| |||||||| ||||| |||||||||||| |||| ||| | || |||||||||||||||| ||  ||  |||  | |  | |     |  |   || ||  |   || || || ||| | |        || ||                 
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: EFJ36319 (Selaginella moellendorffii), 5'ss of exon 11
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaa--tgttttgt-aacttactgacttctgtgtccactttatgattacag
|||||||| |||||||| ||||||   || ||||| ||| | || ||||| || ||||||||| | || ||| |||| ||||| |||||||||||||    | ||  ||  | ||||  | |  | |    |  ||| || |||| |                           
GTAACTACTATGTATCACCTGGACAAGCCAATGTATTTGCTTGGCTATCTGGCAAATCAAAGCCGAGTGTATCTGATCGACAAGGAGTTCAAgtaagt--gttttcgacgatcatgaacgatggctaatcctcctgtgaaattacag---------------------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: EFJ09529 (Selaginella moellendorffii), 5'ss of exon 11
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgtaacttactgacttctgtgtccactttatgattacag
|||||||| |||||||| ||||||   || ||||| ||| | || ||||| || ||||||||| | || ||| |||| ||||| |||||||||||||    | ||||||| || ||||    ||| |||  |  |       |||  |    |                  
GTAACTACTATGTATCACCTGGACAAGCCAATGTATTTGCTTGGCTATCTGGCAAATCAAAGCCGAGTGTATCTGATCGACAAGGAGTTCAAgtaagt--gttttttacttttctgatcatgaacgatggctaatcctcctgtgaaattacag------------------