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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAAAAATCATCATTGGTGGCAAAAGGCACAGTCTAGGGATGACTTTCTATGAGCCTACTGTTATCCGCGATGTTTCGGATAACATGATCATGTCTAAgtaagtactgaaaaatttcacataattgcagtgttacagcttcttgtatctctaaagaacgagttatagaaacatagtgttcctcgcatttttgtgatcagaagaactaatttactttttctag

Basic information

species Arabidopsis thaliana
transcript AT1G79440.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79440.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 16
GAGCAAAAATCATCATTGGTGGCAAAAGGCACAGTCTAGGGATGACTTTCTATGAGCCTACTGTTATCCGCGATGTTTCGGATAACATGATCATGTCTAAgtaagtactgaaaaatttcacataa--ttgcagtgttacagcttcttgtatctctaaagaacgagttatagaaacatagtg---ttcctcg-catttttgtgatcagaagaactaatttacttt--ttctag
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GAGCAAACATCATGCTTGGTGGTAAAAGGCACAGCCTTGGGATGTCATTCTATGAGCCAACTGTAGTAGGGAACGTCAGCAATGATATGCTTCTTTTCAGgtagggttcaaaaattgtgatttgaccttattttagtgcatatgctt-taccttcatgcgaagaaatgttcaatcattgagaaattctttgacatccttgttctagtttctaacaatcacatttggcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482451|gb|EG525043.1|EG525043
EST:     TATGAGCCTACTGTTATCCGCGATGTTTCGGATAACATGATCATGTCTAA                         GGAGGAGATTTTTGGACCTGTAGCTCCCCTTATTCGGTTCAAAACCGAGGA
genomic: TATGAGCCTACTGTTATCCGCGATGTTTCGGATAACATGATCATGTCTAAgtaagtactg ... ctttttctagGGAGGAGATTTTTGGACCTGTAGCTCCCCTTATTCGGTTCAAAACCGAGGA
EST: gi|124946989|gb|EL022862.1|EL022862
EST:     TTATCCGCGATGTTTCGGATAACATGATCATGTCTAA                         GGAGGAGATTTTTGGACCTGTAGCTCCCCTTATTCGGTTCAAAACCGAGGA
genomic: TTATCCGCGATGTTTCGGATAACATGATCATGTCTAAgtaagtactg ... ctttttctagGGAGGAGATTTTTGGACCTGTAGCTCCCCTTATTCGGTTCAAAACCGAGGA