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ATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAATTGGTTCTTTTCTTGGTTGATCACCATGACAGCAAATTTGCTGTTAGCCTGGAGCAGTGGAGgttcctttctctctttctcttcttttctctttctctcataccatttgggacaatagagcattatcttgatggatttttgggttaatattggacag
species | Arabidopsis thaliana |
transcript | AT1G75220.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CCTGGAGCAGTGGAG GAACTTTCACTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGAEST: gi|124780450|gb|EH870393.1|EH870393
genomic: CCTGGAGCAGTGGAGgttcctttct ... tattggacagGAACTTTCACTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGA
EST: TTAGCCTGGAGCAGTGGAG GAACTTTCACTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGAEST: gi|125091921|gb|EL149744.1|EL149744
genomic: TTAGCCTGGAGCAGTGGAGgttcctttct ... tattggacagGAACTTTCACTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGA
EST: CTGTTAGCCTGGAGCAGTGGAG GAACTTTCACTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGAEST: gi|86087762|gb|DR383521.1|DR383521
genomic: CTGTTAGCCTGGAGCAGTGGAGgttcctttct ... tattggacagGAACTTTCACTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGA
EST: TTGGTTGATCACCATGACAGCAAATTTGCTGTTAGCCTGGAGCAGTGGAG GAACTTTCACTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGAEST: gi|124920040|gb|EH993778.1|EH993778
genomic: TTGGTTGATCACCATGACAGCAAATTTGCTGTTAGCCTGGAGCAGTGGAGgttcctttct ... tattggacagGAACTTTCACTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGA
EST: CACCATGACAGCAAATTTGCTGTTAGCCTGGAGCAGTGGAG GAACTTTCACTCTGTATGGA
genomic: CACCATGACAGCAAATTTGCTGTTAGCCTGGAGCAGTGGAGgttcctttct ... tattggacagGAACTTTCACTCTGTATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAATTGGTTCTTTTCTTGGTTGATCACCATGACAGCAAATTTGCTGTTAGCCTGGAGCAGTGGAGgttcctttctctctttctcttcttttctctttctctcataccatttgggacaatagagcattatcttgatggatttttgggttaatattggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG