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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTCTTCGGAGCAAAACCAGAAATGATAATCAAAGGAGGCAATATAGCATGGGCTAATATGGGCGATGCAAATGCGAGCATACCCACTCCTGAGCCGgtaatcattactgactactagattctagactcgttttcttgacaacacgtctctaaagacggtcctttcttttattttatgatggtag

Basic information

species Arabidopsis thaliana
transcript AT1G67550.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: 13114.m00152 (Oryza sativa), 5'ss of exon 5
GGCTTTCTTCGGAGCAAAACCAGAAATGATAATCAAAGGAGGCAATATAGCATGGGCTAATATGGGCGATGCAAATGCGAGCATACCCACTCCTGAGCCGgta-atcattactgactactagattctagactcgttttcttgacaacacgtctctaaagacggtcctttcttttattttatgatggtag------------
  ||||||| |||||||||||||||||| | || || || ||   ||| ||||| ||||||||||| ||| ||||||| ||||| || || ||||| ||||||    | | ||   |   |     |    |    |  || | | |  || |   |   |   |    |    ||||    |  | ||            
TTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGgtacggaacttcttcttgagatgagttgagttgaaatagttaagagcctgtttggtagagct-ccaacaccaaaatttagctacaggagttgggtctgaag

upper sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA05G27840.1 (Glycine max), 5'ss of exon 16
GGCTTTCTTCGGAGCAAAACCAGAAATGATAATCAAAGGAGGCAATATAGCATGGGCTAATATGGGCGATGCAAATGCGAGCATACCCACTCCTGAGCCGgtaatcattactgactactagattctagactcgttttcttgacaacacgtctctaaagacggtcctttcttttattttatgatggtag-------------
  |||| || || ||||||||||||||| | |||||||| ||     | ||||||||| ||||||| ||  ||||||| ||||| ||||||||||| |||||||   ||    |       | | | |  |   ||| |    |    | ||||    |  ||| ||| |  |||||        ||              
ATCTTTTTTTGGGGCAAAACCAGAAATGGTGATCAAAGGTGGGGTGGTTGCATGGGCTGATATGGGTGACCCAAATGCAAGCATCCCCACTCCTGAACCGgtaaagtttttgtatctaactagtttggcttgagtttttaagtagagtgcctcttgc-atagtcttttttggtatttagattccttaatgttgttctatat

upper sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 16
GGCTTTCTTCGGAGCAAAACCAGAAATGATAATCAAAGGAGGCAATATAGCATGGGCTAATATGGGCGATGCAAATGCGAGCATACCCACTCCTGAGCCGgtaatcattactgactactagattctagactcgttttcttgacaacacgtctctaaagacggtcctttcttttattttatgatggtag-------------
  ||||||| || ||||||||||||||| | || ||||| ||    || ||||||||||| ||||| ||| ||||||| ||||| || || ||||| |||||||    |  | | || |  |||    ||    |     |  || | |    |  | ||   |  ||    |  || ||||    |              
ATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgtaaattatttttattaatgaatttataacatactgagaagggaa-aagaaagtggaaacaccctgtttacattgttcatgagcaaattgcaatttaatga