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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGgtcagttttctcagcaaaaatatgttctctttccctgaaagaaaagggtaaccgttatatattattattcaaatagtatctcttatccatcaccaacatc...

Basic information

species Arabidopsis thaliana
transcript AT1G67320.3
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67320.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA05G28150.1 (Glycine max), 5'ss of exon 16
GATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGgtcagtttt---------ctcagcaaa--aatatgttctctttccctgaaagaaaagggtaaccgttatatattattattcaa-atagtatctcttatccatcaccaacatc
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GATTATACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGGGATCATCATGGTTGCCCCTATCGACATTTCAGgtcactcttgatacttgtgctatcaaatggatagttttactttctttattggagatgtgaaatag--ataagttattgtccagtaaattttactttataaat----------

upper sequence: AT1G67320.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA08G11130.1 (Glycine max), 5'ss of exon 16
GATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGgtcagtttt---------ctcagcaaaaatatgttctctttccctgaaagaaaagggtaaccgttatatattattattcaaatagtatctcttatccatcaccaacatc
|| || || || ||| ||||| |||||| || |||| ||||||| ||||| |||||||| || |||||||||||| ||||||||||| | || | |||| || | | ||| | | || | || ||||| | || | | | ||| |
GACTACACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGAGATCATCATGGTTGCCCTTATCGAAATTTCAGgtcactcttaatacttgtgctatcaaatggatagtttagccttctgtattggagatgtgaaatagctaggttattgtccagtaaattttacttgataaat---------

upper sequence: AT1G67320.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv05s0051g00930.t01 (Vitis vinifera), 5'ss of exon 16
GATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGgtcagttttctcagcaaaaatatgttctct--ttccctgaaagaaa-agggtaaccgttatatattattattcaaatagtatctcttatccatcaccaacatc
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GATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAGgtaagatttataaatcatacctttctatttaactctttgacattattatgggaaacttcacaaact-tgcttgagacaaggttttat-tatattgtttgttt-