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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGgtcagttttctcagcaaaaatatgttctctttccctgaaagaaaagggtaaccgttatatattattattcaaatagtatctcttatccatcaccaacatc...

Basic information

species Arabidopsis thaliana
transcript AT1G67320.3
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67320.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA05G28150.1 (Glycine max), 5'ss of exon 16
GATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGgtcagtttt---------ctcagcaaa--aatatgttctctttccctgaaagaaaagggtaaccgttatatattattattcaa-atagtatctcttatccatcaccaacatc
|||||||| || ||| |||||  |||||| ||  ||||  ||||||| |||||||||||||| || ||||| |||||||||||||||||| | ||            | ||||   |||  ||  |||||  |    || | | | ||  |  |||  ||||| | ||  | | | |   ||||  ||          
GATTATACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGGGATCATCATGGTTGCCCCTATCGACATTTCAGgtcactcttgatacttgtgctatcaaatggatagttttactttctttattggagatgtgaaatag--ataagttattgtccagtaaattttactttataaat----------

upper sequence: AT1G67320.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA08G11130.1 (Glycine max), 5'ss of exon 16
GATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGgtcagtttt---------ctcagcaaaaatatgttctctttccctgaaagaaaagggtaaccgttatatattattattcaaatagtatctcttatccatcaccaacatc
|| || || || ||| |||||  |||||| ||  ||||  ||||||| ||||| |||||||| || |||||||||||| ||||||||||| | ||            | ||||   ||  | |      ||| |    |   || |      ||  ||||| | ||   | | |  |||    |           
GACTACACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGAGATCATCATGGTTGCCCTTATCGAAATTTCAGgtcactcttaatacttgtgctatcaaatggatagtttagccttctgtattggagatgtgaaatagctaggttattgtccagtaaattttacttgataaat---------

upper sequence: AT1G67320.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv05s0051g00930.t01 (Vitis vinifera), 5'ss of exon 16
GATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAGgtcagttttctcagcaaaaatatgttctct--ttccctgaaagaaa-agggtaaccgttatatattattattcaaatagtatctcttatccatcaccaacatc
||||| || |||||| |||||  ||| || ||  ||||  |||||||||  || ||||||||||| ||||||||||||||||| |||| || ||| | |   | |   |  | | |   ||  ||| |  |  | || || | | | | | | |  || | | |   | |  | |  ||        | 
GATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAGgtaagatttataaatcatacctttctatttaactctttgacattattatgggaaacttcacaaact-tgcttgagacaaggttttat-tatattgtttgttt-