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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACACAGCAGCTAGACCGGTGATTCTAGAACCTGTTATGCTGGTTGAGTTGAAAGTACCAACAGAGTTTCAGGGCACTGTTGCTGGTGACATCAACAAgtaaactctaaaaccctttaacatgcccttttttactcctattcatgttagtataataactccaacttgtttcattttcag

Basic information

species Arabidopsis thaliana
transcript AT1G45332.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 12
GTTACACAGCAGCTAGACCGGTGATTCTAGAACCTGTTATGCTGGTTGAGTTGAAAGTACCAACAGAGTTTCAGGGCACTGTTGCTGGTGACATCAACAAgtaa--actctaaaaccctttaacatgcccttttttactcctattcatgttagtataata-actccaacttgtttcattttcag
||||  ||||  | |||||||| ||  |||||||||||||||| |||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||| |    |||  |    |||||| ||    || |      | ||||   |  | | | | | |   |  |   |||| |  ||
GTTATGCAGCTTCCAGACCGGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACATCAACAAgtgagagttctttacttttttaac-tggatattgtggtaaattttcagaattctctgacatagtttta--taactcatataaag

upper sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 17
GTTACACAGCAGCTAGACCGGTGATTCTAGAACCTGTTATGCTGGTTGAGTTGAAAGTACCAACAGAGTTTCAGGGCACTGTTGCTGGTGACATCAACAAgtaaac---tctaaa-accctttaaca--tgccctt-----ttttactcctattcatgttagtataataactccaacttgtttcattttcag---
| || |||||||| | ||| |||||  | |||||||| ||||| || || |||||||  |||||||| ||||||||||||||| ||||||||||||| |||| |     ||||   || || || ||  || | |      ||| |  |  | || ||  | |  || ||    ||  |  | ||| |  |    
GCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATAAgtgagtgcttctatttactctctaccaaatgtcatcaacgctttcatactaactcctggaaatgaaaaaaaaaaaatgt-ctgcatctataatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125121697|gb|EL168738.1|EL168738
EST:     TTGCTGGTGACATCAACAA                         GAGGAAAGGTATAATCGTTGGAAACGATCAAGAGGGTGACGATTCAGTAAT
genomic: TTGCTGGTGACATCAACAAgtaaactcta ... tcattttcagGAGGAAAGGTATAATCGTTGGAAACGATCAAGAGGGTGACGATTCAGTAAT