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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTCTGGAACGTGCAAAAGCAGCTGTTCTTCGGTATGGGATTCGAGGACTTGTTATAGATCCTTACAATGAGCTCGATCATCAACGTACTCCACGCCAgtgagtgaagaaaatattttcactgaataccctctttcctttctgaaacatgaaagattaatattcgttttgatag

Basic information

species Arabidopsis thaliana
transcript AT1G30680.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30680.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA15G14240.1 (Glycine max), 5'ss of exon 10
GGGTTCTGGAACGTGCAAAAGCAGCTGTTCTTCGGTATGGGATTCGAGGACTTGTTATAGATCCTTACAATGAGCTCGATCATCAACGTACTCCACGCCAgtgagtg----aagaaaatattttca--ctgaataccctctttcctttctgaaacatgaaagattaatattcgttttgatag------------------
||||||| || | ||||||||| |||||  |  || ||||| | || |||||||| || ||||||||||||||||| |||||||||||  ||||   ||||| | |     ||||   |||| | |   || ||      || | ||| |  ||  || |     | | ||     |  | |                  
GGGTTCTTGATCTTGCAAAAGCTGCTGTATTAAGGCATGGGGTGCGTGGACTTGTAATTGATCCTTACAATGAGCTTGATCATCAACGGCCTCCTAACCAgtaattctctcaagagcttattctaaacttggattttgatttgcttttgtttaagttgtacttgaactctttagaatactgggaactgcctagagaattc

upper sequence: AT1G30680.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA09G03310.1 (Glycine max), 5'ss of exon 11
GGGTTCTGGAACGTGCAAAAGCAGCTGTTCTTCGGTATGGGATTCGAGGACTTGTTATAGATCCTTACAATGAGCTCGATCATCAACGTACTCCACGCCAgtgagtgaagaaaatattttcactgaataccctctttccttt-ctgaaacatgaaagattaat--attcgttttgatag---------------------
||||||| || | ||||||||| |||||  |  || ||||| | || |||||||| || ||||||||||||||||| |||||||||||  | |||  ||||| | |     ||  | ||   || ||       |||  ||| ||      | |    |   |  | || |||  |||                      
GGGTTCTTGATCTTGCAAAAGCTGCTGTATTAAGGCATGGGGTGCGTGGACTTGTAATTGATCCTTACAATGAGCTGGATCATCAACGACCCCCAAACCAgtaattctcttaataacttattctaaactttgattttgttttgcttttgtttaagttgtacgtgaactcttttgaatactgggaactgcctagagaattc