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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTCCAACCAGGAGCTCCAGCCATTTCCATTAAGAATGGATATTTTTCATGGGATTCAAAGgtgaatcctcaaaatatccctcttgcttagattatgttgagacgcaatattagtttatgcaattgtacacatgacattctgatcatggtgtttgctcgaatattttccag

Basic information

species Arabidopsis thaliana
transcript AT1G30420.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 16
ACTTTTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTCCAACCAGGAGCTCCAGCCATTTCCATTAAGAATGGATATTTTTCATGGGATTCAAAGgtgaatcctcaaaatatccctcttgcttagattatgttgagacgcaatattagtttatgcaattgtacacatgacattctgatcatg-gtgtttgctcgaatattttccag
 || ||   |||||||||| | ||    |  || ||||||||  | || |    |||||| ||||| |||||||||||||||||||||||||| ||  |||| | | |     || |  |   |  ||   |  | |  | |    ||||   | |   | ||   |||    ||  ||| |||||   |   |  |  |||||    || 
CCTCTTGGCTGAAGAGAGATTACTTCTGCCCAATCCACCTCTTGATCCTGAGCTTCCAGCAATTTCTATTAAGAATGGATATTTTTCATGGGAATCGCAGgtaatttc-----atgtttcagatatttgcctggtatctaaat---atatctatgttgactatcacacattcaac--tctcatcattcattgatattataatataacaca-

upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GRMZM2G084181_T01 (Zea mays), 5'ss of exon 16
ACTTTTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTCCAACCAGGAGCTCCAGCCATTTCCATTAAGAATGGATATTTTTCATGGGATTCAAAGgtgaatcctcaaaatatccctcttgcttagattatgttgagacgcaatattagtttatgcaattgtacacatgacattctgatcatggtgtttgctcgaatattttccag
 || ||   |||||||||| | ||    | ||| |||||| |  | || |    |||||||||||| || |||||||| |||||||||||||| ||| |||| ||| |     || |      |  ||  |||   |||  ||      ||| ||| | ||||  |  |  ||    ||| |  ||  || | | |   || | ||    
CCTGTTGGCTGAAGAGAGATTACTTCTGCCAAATCCACCTATTGATCCTGATCTTCCAGCCATTTCTATCAAGAATGGGTATTTTTCATGGGAATCAGAGgtaaattc-----atgttttatatatttttatttatttgccactatcatttattttcttcaatcttgtaattgctgctcttaggattatggtagtt--gatttcttg---

upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 18
ACTTTTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTCCAACCAGGAGCTCCAGCCATTTCCATTAAGAATGGATATTTTTCATGGGATTCAAAGgtgaatcctcaaaatatccctcttgcttagatta----tgttgagacgcaatattagtttatgcaattgtacacatgacattctgatcatggtgtttgctcgaatattttccag
  | |||  ||| ||| ||| | ||  |||||| |||||| |  ||||||||  ||||||||| || ||| |||||||||| ||||||||||||   |||||||||      |  |||| |||        |||    | ||   | |   | ||| |||    ||||  |||        | || | |   | |  ||               
GTTCTTAGCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCAGGACTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCGTAAGgtgaatttgtctatgatccttctgttcacagttactagttttttaaagttgtgttaattttcaaaatta-acaggcacagatatgtttacaatataagcca-------------

upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 17
ACTTTTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTCCAACCAGGAGCTCCAGCCATTTCCATTAAGAATGGATATTTTTCATGGGATTCAAAGgtgaatcctcaaaatatccctcttgcttagattatgttgagacgcaatattagtttatgcaattgtacacatgacattctgatcatggt-gtttgctcgaatattttccag
  | |||| |||||||||| |||| |||| ||| ||| ||||  ||||||||  ||||||||| || || ||| ||||||| ||||| ||||||||||||||  |   |  | || |   | || |||   ||   ||    |    | ||  ||| |   |    ||||||     |  | |  || | ||||  | |  | ||| |   
GTTCTTAACTGAAGAGAGAGTTCTTGCACCAAATCCAACTCTTGAACCAGGACTTCCAGCCATCTCAATCAAGGATGGATACTTTTCTTGGGATTCAAAGgtctaattttcatatttatttatttctttttttccttt----cttctttttcttttttattacgaaacacat----cttaggtggtgtttgtttttttggctttttgc---