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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATGATCCACGTCTTTTGACACTTTCTGGTTTGAGACGGAGGGGTGTGACTTCAACTGCGATTAATGCATTTGTACGAGGCATTGGGATTACTAGAAGgttgctacatatatatatctgaatacatcatactatttggcatatgtcaattatctttgttaactctgctctctattgttctgtgttaaag

Basic information

species Arabidopsis thaliana
transcript AT1G25350.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 16
GGGATGATCCACGTCTTTTGACACTTTCTGGTTTGAGACGGAGGGGTGTGACTTCAACTGCGATTAATGCATTTGTACGAGGCATTGGGATTACTAGAAGgt-tgctacatatatatatctg-aatacatcatactatt-tggcatatgtcaattatctttgttaactctgctctctattgttctgtgttaaag------
|||||||||| ||| |  |||||||  |||||||| | || || ||  ||||| ||||||| || ||||| ||||||||||| ||||| || |||||||||| || ||   || | || ||  | |   | |||  |   |   || | | | ||||   |||  |        |  |   |       |   |      
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatgaatttctaactacagttgtttatataaaaatactatttctaagttattgatgtggaaaagtacttgaaacatctcacactttggttcata

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 16
GGGATGATCCACGTCTTTTGACACTTTCTGGTTTGAGACGGAGGGGTGTGACTTCAACTGCGATTAATGCATTTGTACGAGGCATTGGGATTACTAGAAGgttgctacatatatatatctgaatacatcatactatttggcatatgtcaattatctttgttaactctgctctctattgttct--gtgttaaag----------------
|||||||||| |||||| ||||| |  |||||||| |||| ||||| |||||||||||  | || ||| | ||| | ||||| ||||| || ||||||||||||   ||||| | | | ||   | |||  |  ||||  || || ||  |  | | |  |   | |  |   |||| |  |   | || |                  
GGGATGATCCTCGTCTTATGACATTAGCTGGTTTGCGACGTAGGGGGGTGACTTCAACATCAATAAATACTTTTATTCGAGGAATTGGAATCACTAGAAGgttgg-gcatat-tttgtttgggcatatctaaagatttaccaaatatctttagtttcttatctttttatttggtattatcattgatattcattatactttgtggtacag