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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCAACAAGCCTGATGTCCGCTTTGTTATTCATCACTCGCTCCCAAAGTCTATAGAAGGCTATCATCAGgtatttttaattatacaatcaatcatgtaaatcttattaaactgattccacataaggctagatactgttatctcgtctagaaactcacataagctatattatttgtaatcaag

Basic information

species Arabidopsis thaliana
transcript AT1G10930.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10930.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: LOC_Os04g35420.1 (Oryza sativa), 5'ss of exon 15
GAATCAACAAGCCTGATGTCCGCTTTGTTATTCATCACTCGCTCCCAAAGTCTATAGAAGGCTATCATCAGgtatttttaattatacaa------tcaat-catgtaaatcttattaaactgattccacataaggctagatactgttatctcgtctagaaactcacataagctatattatttgtaatcaag
| || || || ||||||||||| |||||||| ||||| || || || || || || ||||| |||||||||||||||| ||| | | ||       ||||   || | |||  | |    | |    |  |  |  |    |||||||||   | |||                                 
GTATTAATAAACCTGATGTCCGTTTTGTTATCCATCATTCCCTGCCCAAATCAATTGAAGGATATCATCAGgtattttcaatgacataagtttcgccaatgtgtgcacatcaaaatggcataaacttagctgtgtttgatgactgttatcct-tttag---------------------------------

upper sequence: AT1G10930.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GRMZM2G319573_T01 (Zea mays), 5'ss of exon 14
-----------------------------GAATCAACAAGCCTGATGTCCGCTTTGTTATTCATCACTCGCTCCCAAAGTCTATAGAAGGCTATCATCAGgtatttttaattatacaa--tcaatcatgtaaatcttattaaactgattccacataaggctagatactgttatctcgtctagaaactcacataagctatattatttgtaatcaag
                             | ||||| || |||||||| ||||||||||||||||| || || || ||||| || ||||| ||||||||||||| | | || |   ||  |  || |  | |     ||  |||||        ||| |    |  ||||    | ||  |   | || ||||                      
GTGTTCCAATCTAATAGGACAAACTGTAGGTATCAATAAACCTGATGTTCGCTTTGTTATTCATCATTCACTGCCCAAGTCAATTGAAGGATATCATCAGgtatatctcataactgaagtttcatgacatgagcacaatggaactg--------taaagtcgaa-gctgtatggtggttgatctattctcatag---------------------

upper sequence: AT1G10930.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GRMZM2G319573_T02 (Zea mays), 5'ss of exon 12
GAATCAACAAGCCTGATGTCCGCTTTGTTATTCATCACTCGCTCCCAAAGTCTATAGAAGGCTATCATCAGgtatttttaattatacaa--tcaatcatgtaaatcttattaaactgattccacataaggctagatactgttatctcgtctagaaactcacataagctatattatttgtaatcaag
| ||||| || |||||||| ||||||||||||||||| || || || ||||| || ||||| ||||||||||||| | | || |   ||  |  || |  | |     ||  |||||        ||| |    |  ||||    | ||  |   | || ||||                      
GTATCAATAAACCTGATGTTCGCTTTGTTATTCATCATTCACTGCCCAAGTCAATTGAAGGATATCATCAGgtatatctcataactgaagtttcatgacatgagcacaatggaactg--------taaagtcgaa-gctgtatggtggttgatctattctcatag---------------------

upper sequence: AT1G10930.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA08G20070.1 (Glycine max), 5'ss of exon 18
GAATCAACAAGCCTGATGTCCGCTTTGTTATTCATCACTCGCTCCCAAAGTCTATAGAAGGCTATCATCAGgtatttttaattatacaatcaatcatgtaaatcttattaaactgattccacataaggctagatactgttatctcgtctagaaactcacataagctatattatttgtaatcaag
| || ||||| ||||||||||||||||| || ||||| || |||||||| ||||| |||||||||||||||||| |            |   | |||  |||| |  ||          || ||| |  | | | |||||  ||            ||  || | |||||  |||    |||  
GTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGgtact-----------gacagaacataaaaatgtgtttgg--------catataggttttgcttctgttggctta----------catgtatgatatatattttcctttcag-

upper sequence: AT1G10930.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv12s0035g00400.t01 (Vitis vinifera), 5'ss of exon 12
GAATCAACAAGCCTGATGTCCGCTTTGTTATTCATCACTCGCTCCCAAAGTCTATAGAAGGCTATCATCAGgtatttt-------taattatacaatcaat-catgtaaatcttattaaac-----------tgattccacataaggctagatactgtta-tctcgtctagaaactcacataa----gctatattattt-gtaatcaag
| |||||||| || |||||||||||||| |||||||| || || ||||| || || ||||| |||||||||||| |||       | ||| ||| |||  | ||  |   |||||| |||            ||||   | ||   | | |      ||| | |   ||  |   |   |||      | ||||| | |  | | | ||
GTATCAACAAACCAGATGTCCGCTTTGTCATTCATCATTCTCTTCCAAAATCAATTGAAGGGTATCATCAGgtaatttgtgaaaatgattttaccatctttacaaattgttcttataaaatattcctattgttgatctaagatggtgatgggagtacttagttttcactcaatggttttatagtttcaccatattctctcatgacccag