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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGGGCCTGGGCAAAACTTTTCAGgtgcttaattcttttcatgcacgaggctgtttggatatatcgtattatcgtccgattctattagtgcatactactaatggttaatcgttatttgttaattactggctctttatgtcttctctcacttaaacctattcag

Basic information

species Arabidopsis thaliana
transcript AT1G08600.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08600.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: LOC_Os10g31970.1 (Oryza sativa), 5'ss of exon 14
GTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGGGCCTGGGCAAAACTTTTCAGgtgctta---attcttttcatgcacgaggc-tgtttggatatatcgtattatcgtccgattctattagtgcatactactaatggttaatcgttatttgttaattactggctctttatgtcttctctcacttaaacctattcag
|||||||||| | || || ||| |||  |  ||||| ||||| ||||||||| ||||||||||| | || || |  |||||||| || ||||||||||||||   ||   | | || || || |  |    |  |||  |   || |   ||  | |     |||||    ||  |    ||||||| | | |  |  |                                            
GTGGGAAAATGTGATCCAATCTGTCAAGAAGGTCAAATCTGGGGATAAAGGTTTTGGTTGCATTTTGGCTCACAACATGGGCCTTGGGAAAACTTTTCAGgtttgtactgacttttgtcctgtaatatatattcttgatttcttcattacatgattcagccatattatcatattttttccatggttattagatcatattc-------------------------------------------

upper sequence: AT1G08600.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA20G37100.1 (Glycine max), 5'ss of exon 18
GTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGGGCCTGGGCAAAACTTTTCAGgtgcttaattcttttcatgcacgaggctgttt--ggatatatcgtattatcgtccgattctattagtgcatactactaatggttaatcgttatttgttaattactggctctttatgtcttctctcacttaaacctattcag
|||||||||||| || ||||| ||||| | ||| |||||||| |||||||||||||| || |||||||| ||||| |||||||| || ||||||||||||||  |  | || ||   |  |      | |||   ||||     |  | | | |  | |  |  |||| || ||  |  | |  ||||   || ||  |  |                                       
GTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGgtattatactcattatgtagatagattttttttatgataagctattatgtagacataattaaagagtgaattctgttttttgaaaatc--catatgacagat---------------------------------------

upper sequence: AT1G08600.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv14s0036g01460.t01 (Vitis vinifera), 5'ss of exon 13
GTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGGGCCTGGGCAAAACTTTTCAGgtgcttaattcttttcatgcacgaggctgtttggatatatcgtattatcgtccgattctattagtgcatactactaatggttaatcgttatttgttaattactggctctttatgtcttctctcacttaaacctattcag
||||||||||||||| ||||| || || | ||| || |||||||||||||||||||||||||||||||| || || ||||| || || ||||||||||||||  |   ||| ||||   ||        ||        |  | |  || |  ||   | |||| | |||     ||||| | |||   | ||||  ||        | | |                           
GTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGGGGCTTGGTAAAACTTTTCAGgtattgcgttcgtttctctca----atcattc-----ctttttctcttcatgagaagttcttagagaataaa---aatggcttatcaa-acttgtacatgtgcaatgcctgaa--------------------------