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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGCTCCTGAACCTGATTGGGCCTCTTTGAACCTCGGTGTCCTTATTTGTATCGAGTGTTCTGGTATCCATCGTAACCTTGGTGTTCACATTTCAAAGgtttgcaattaaacctacacatccagcaaacatttcactctttccacaaaggggaaagcatgaactatcattttcccattttttataaatttggtataaattatccaaccctgtcgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G61980.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61980.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv17s0000g00310.t01 (Vitis vinifera), 5'ss of exon 15
CGGTGCTCCTGAACCTGATTGGGCCTCTTTGAACCTCGGTGTCCTTATTTGTATCGAGTGTTCTGGTATCCATCGTAACCTTGGTGTTCACATTTCAAAGgtttgcaattaaacctacacatccagcaaacatttcactctttccacaaaggggaaagcatgaactatcattttcccattttttataaatttggtataaattatccaaccctgtcgtgcag
 ||||| ||||||||||||||||| || || || || ||||| ||||| || ||||| || ||||| || || ||||| |||||||| || || ||||||||  |  ||  |   |  | ||   |||     ||  |||||| ||       ||  | ||  |||    | ||   |  |   | ||       |   ||||                  
TGGTGCACCTGAACCTGATTGGGCATCCTTAAATCTGGGTGTTCTTATCTGCATCGAATGCTCTGGCATTCACCGTAATCTTGGTGTGCATATATCAAAGgtaagttatctaggtttga-attgggcac---cttagctcttttcatttgtaagattg-atccacttgggtgttttaagataaaagaacaagaacaggcattagg----------------