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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAAGAAATGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgtaggtttcaatcccgtcaccttagaatgacataatctttaaacattttgacatttttcctgatactcttggttggtattgtgtgaaaag

Basic information

species Arabidopsis thaliana
transcript AT5G18190.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: LOC_Os01g56580.1 (Oryza sativa), 5'ss of exon 15
AAACAAGAAATGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgtaggt---ttcaatcccgtcaccttagaatgacataatctttaaacattttgacatttttcc--tgatactcttggttggtatt----gtgtgaaaag-
 |||||||||||||||||||  || ||||| || || ||||| ||||| || |  || |||||||| || ||||| ||||||||||| |  ||||| ||||||  |    | | |   || |  ||    |  | |  | |  |||    |||  || |   |  || || |     ||  | ||     ||||||||  
CAACAAGAAATGGAAAGAAGGATTTCATGTTACATCAATGACCACTGCAGGAAGCCGCTGGGGTGTAGTTATGTCAAGGAATTCTGGATTTTCTGAACAGgtatttgtggttattggtgtaatatttttttttcctggtgtgcaaatcagttgcaatctaagcgatggtatttcaattttttttttggcatgtgaaaaag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G116086_T01 (Zea mays), 5'ss of exon 15
AAACAAGAAATGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgta------ggtttcaatcccgtcaccttagaatgacataatctttaaacattttgacatttttcctgatactcttggttggtattgtgtgaaaag------
 ||||||||||||||||||| ||| ||||| || || ||||||||||| || |  || |||||||| || ||||| ||||| ||||| |||||||| ||||||         ||   |   ||||    | | | | ||     ||   || |  | || || |      |        | | | ||||||  |        
CAACAAGAAATGGAAAGAAGGTTTTCATGTTACATCAATGACAACTGCAGGAAGCCGCTGGGGTGTAGTTATGTCAAGGAACTCTGGATACTCTGAACAGgtattggggaagttgtttttggtcaatgcacagttaaatgcatattttgcaat--ggcacttctaggagcagctgcatatagaactgtgtggtatttgaaac

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 15
AAACAAGAAATGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgtaggtttcaatcccgtcaccttagaatgacataatctttaaacattttgacatttttcctgatactcttggttggta---------ttgtgtgaaaag-------------------------------
 || ||||| ||||||||||  |||||||| || |||||| | || ||||||||||| ||||| || || ||||| |||||||| || | ||||  ||||||  |  | | | |  | |||    |     ||      |      |   ||| |  ||   ||  | |    || |          || | | | |||                               
CAATAAGAAGTGGAAAGAAGGGTTCCATGTGACATCCATGGCCACCGCTGGGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatgattgctttgaccgcgcagcagtatctgtgctgtgggctc--acactcctctgaattgtgtcaactgatgcctgaacatttatttaacaagccatttacccctctttcccaactactgtcag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G110085_T01 (Zea mays), 5'ss of exon 10
AAACAAGAAATGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgtaggtttcaatcccgtcaccttagaatgacataatctttaaa----cattttgacatttttcctgatactcttggttgg------tattgtgtgaaaag----------------------------------------
 || ||||| ||||||||||  |||||||| || |||||| | || ||||||||||| ||||| || || ||||| |||||||| || | ||||  ||||||  |  | | | |  | |||    |     ||     ||       |   ||| ||    ||    | ||||   |||       |  ||  |||| |                                         
TAATAAGAAGTGGAAAGAAGGGTTCCATGTGACATCCATGGCCACCGCTGGGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatgattgctttgaccgcgcagcagtatctgtgttgtgggctcgccttgccagcgctcacactcctctgaattgtgtcaactgatgcctgaacatttaacaaggcatttagcccccctttcccaactactgtcag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G480263_T01 (Zea mays), 5'ss of exon 11
AAACAAGAAATGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgtaggtttcaatcccgtcaccttagaatgacataatctttaaa----cattttgacatttttcctgatactcttggttgg------tattgtgtgaaaag----------------------------------------
 || ||||| ||||||||||  |||||||| || |||||| | || ||||||||||| ||||| || || ||||| |||||||| || | ||||  ||||||  |  | | | |  | |||    |     ||     ||       |   ||| ||    ||    | ||||   ||        |  ||| |||| |                                         
CAATAAGAAGTGGAAAGAAGGGTTCCATGTGACATCCATGGCCACCGCTGGGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatgattgctttgaccgcgtagcagtatctgtgttgtgggctcgccttgccagcgctcacactcctctgaattatgtcaactgatgtctgaacatttaacaaggcatttagcccccctttcccaactactgtcag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 15
AAACAAGAAATGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgtaggtttcaatcccgtcaccttagaatgaca-taatctttaaacattttgacatttttcctgatactcttggttg-gtattgtgtgaaaag
||||||||| ||||||||||  |||||||| ||||| ||||| |||||||| | ||| |||||||| || ||||| |||||| |||| || ||||||||||||  | |  |||   ||||||| || |     | || | | ||  |||| | ||      || |    ||| ||  || |  ||    |||
AAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCAATGACTACTGCTGGCAGTCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGgta--tctatatcttttcacctttgatttttggttatgtatgaat-ttttaaaatccacattgttgaatttgtttttgtttgatgatgcaag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 15
AAACAAGAAATGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgt--------aggtttcaat---cccgtcaccttag--aatg-----acataatctttaaacattttgacatttttcctgatactcttggttggtattgt--gtgaaaag
 || ||||| |||||||||| ||||||||| || || ||||| |||||||| | ||| ||||| ||||||||||| ||||| ||||| ||  ||||||||||        |  ||| | |       |||| ||||  ||||     |||   ||||| |  | |     || |||  |    || ||   |||| |||    |  ||||
TAATAAGAAGTGGAAAGAAGGTTTCCATGTCACATCTATGACTACTGCTGGAAGTCGCTGGGGGGTGGTAATGTCCAGGAACTCTGGATATACTGATCAGgttacaattaatattttattatttttctcactttagtaaatgtatgaacaatttcttttagaagtagctgatatttatttcccctttttactggtgttgctgatacaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087382|gb|DR383141.1|DR383141
EST:     GGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAG                         GTCGTGGAGCTCGACTTTTTGTACCCAAGCGATGGAATACATAGGAGGTGG
genomic: GGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgtaggtttca ... gtgtgaaaagGTCGTGGAGCTCGACTTTTTGTACCCAAGCGATGGAATACATAGGAGGTGG
EST: gi|86087327|gb|DR383086.1|DR383086
EST:     GGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAG                         GTCGTGGAGCTCGACTTTTTGTACCCAAGCGATGGAATACATAGGAGGTGG
genomic: GGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGgtaggtttca ... gtgtgaaaagGTCGTGGAGCTCGACTTTTTGTACCCAAGCGATGGAATACATAGGAGGTGG