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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagcagagcagtagtgtgatatttagagggttgtgagtttttgatctctcatcttgggtttggattctctctcacacacacag

Basic information

species Arabidopsis thaliana
transcript AT5G13940.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480284|gb|EG522876.1|EG522876
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116481915|gb|EG524507.1|EG524507
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCGGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116481924|gb|EG524516.1|EG524516
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116480243|gb|EG522835.1|EG522835
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116481923|gb|EG524515.1|EG524515
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116480191|gb|EG522783.1|EG522783
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116481912|gb|EG524504.1|EG524504
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116481910|gb|EG524502.1|EG524502
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116481921|gb|EG524513.1|EG524513
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAA
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAA
EST: gi|116480267|gb|EG522859.1|EG522859
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116481918|gb|EG524510.1|EG524510
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116481916|gb|EG524508.1|EG524508
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116480218|gb|EG522810.1|EG522810
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116481922|gb|EG524514.1|EG524514
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
EST: gi|116480168|gb|EG522760.1|EG522760
EST:     AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAG                         GAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT
genomic: AAGATAACCATCCAAGAGCCAACCTTTGAGAGAATCATTGTAGTATACAGgtacgaaagc ... acacacacagGAGAGTCTCAGGGAAGAAGGAATCAGAAAGGAACATATATGTGAAACACTT