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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGAACAAATTGGGAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTTCGCAGTTTCCGTATCCAGAAACAGACACCATTTCAACAGTTTAAGgtacttgcctgcgtatctttgatttattttttccaaaaaggaaataaattagtgtatgtgaaaacggtctttctggtaacaattgatctggatttcatgagaaaccttcaaaattctgctgactaaaaaagttctttatgtacaatttaagcaatcgttgaccttcaattttatgctgatatag

Basic information

species Arabidopsis thaliana
transcript AT5G06600.3
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 15
TAAGGAACAAATTGGGAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTTCGCAGTTTCCGTATCCAGAAACAGACACCATTTCAACAGTTTAAGgtacttgcctgcgtatctttgatttattttttccaaaaaggaaata--aattagtgtatgtgaaaacggtctttctggtaacaattgatctggatttcatgagaaaccttcaaaattctgctgactaaaaaagttctttatgtacaatttaagcaatcgttgaccttcaattttatgctgatatag
 |||||||| ||||| ||| |||||||||||||||| ||||| ||||| || |||||||| ||||| || ||||| ||   ||| |||      |||||||||           |    |  |||    ||   || ||||| |      | ||| | ||||| |  || ||      ||||   |  |  || |||     |  ||||                                                                             
GAAGGAACAGATTGGTAAGAATATATATTTTGATCTGGTGGACCATGAAAAGGTTCGCAGCTTCCGCATACAGAAGCAACTACCTTTTACTTCATTTAAGgtaaccattcctaaacacctagttt----ttcataacaaggatacgctgttaagtttctgtgatataggcct-----ataacttattttagggttttgcactgctacct-----------------------------------------------------------------------------

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 11
TAAGGAACAAATTGGGAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTTCGCAGTTTCCGTATCCAGAAACAGACACCATTTCAACAGTTTAAGgtacttgcctgcgtatctttgatttattttttccaaaaaggaaataaattagtg-tatgtgaaaacggtctttctggtaacaattgatctggatttcatgagaaaccttcaaaattctgctgactaaaaaagttctttatgtacaatttaagcaatcgttgaccttcaattttatgctgatatag
 ||||| |||||||| ||||||||||||||||| || ||||| ||||| |||||||| || ||||| || ||||| |||  ||  |||      || ||||||   |  |||  |    |  ||  ||  |  ||         ||||||  || |||  ||  ||      |   |||| |||  |   | | || |  |      || || |   || | | ||                                                           
GAAGGAGCAAATTGGCAAGGATATATATTTTGACCTGGTGGACCATGAAAAAGTTCGTAGCTTCCGAATTCAGAAGCAGTTACTGTTTACCACTTTCAAGgtaag-gtgtgcaaacaagttcttggttcgtagcattggaatgctaaatttctgctatacgagtacacatgcttctgtaa-aatcaactggtaattta--acttctgttgaataaattgtttaatag----------------------------------------------------------

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: LOC_Os01g56490.1 (Oryza sativa), 5'ss of exon 15
TAAGGAACAAATTGGGAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTTCGCAGTTTCCGTATCCAGAAACAGACACCATTTCAACAGTTTAAGgtacttgcctgcgtatctttgatttattttttccaaaaaggaaataaattagtgtatgtgaaaacggtctttctggtaacaattgatctggatttcatgagaaaccttcaaaattctgctgactaaaaaagttctttatgtacaatttaagcaatcgttgaccttcaattttatgctgatatag
|   || |||||||| ||  ||||||||||||||||||||||| |||||||  | |  ||  | ||    |  |||||     || |  | |||   ||||||  |   |||  | | |  |||| |  |  |||  |   |   ||||  || ||| | |  |     | |  | ||   |  ||  || ||| |||     |                                                                                
TGCAGAGCAAATTGGAAAACATATATATTTTGATCTTGTGGATTATGACAACATCCAAAGCCTTCGGGCACCTAAACATTTGACAATAAACCAGGCCAAGgtaactttttgctgagcctc-atttgtcat--ccatgatatatcaaaatgtgtatatctaatgaa----tatacgatatgcacagaattgtattgcattgatgatgc-----------------------------------------------------------------------------

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G303655_T01 (Zea mays), 5'ss of exon 5
TAAGGAACAAATTGGGAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTTCGCAGTTTCCGTATCCAGAAACAGACACCATTTCAACAGTTTAAGgtacttgcctgcgtatctttgatttattttttccaaaaaggaaataa--attagtgtatgtgaaaacggtctttctggtaacaattgatctggatttcatgagaaaccttcaaaattctgctgactaaaaaagttctttatgtacaatttaagcaatcgttgaccttcaattttatgctgatatag
 ||||| ||||| || ||| |||||||||||||||| ||||| ||||| ||||||| ||||||||| || ||||| |||   || |||      || |||||| | |||     | |  | |  | ||| ||  ||  | |   | |   |||   | | || | ||     | ||  |   ||  |||   | |   |                                                                                       
AAAGGAGCAAATCGGTAAGAATATATATTTTGATCTGGTGGACCATGAAAAAGTTCACAGTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAGgtattggcccaaaaaaccct-acatgtttatttaaaccatggcttcatggttatgatttttggatactacagtcctctttgtaagagattgagctgctaca-------------------------------------------------------------------------------------

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 15
TAAGGAACAAATTGGGAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTTCGCAGTTTCCGTATCCAGAAACAGACACCATTTCAACAGTTTAAGgtacttgcctgcgtatctttgatttattttttccaaaaaggaaataaattagtgtatgtgaaaacggtctttctggtaacaattgatctggatttcatgagaaaccttcaaaattctgctgactaaaaaagttctttatgtacaatttaagcaatcgttgaccttcaattttatgctgatatag
 ||||| |||||||| ||  ||||||||||||| || ||||| ||||| |||||| |||| ||||| || ||||| |||   || |||      ||  ||||| | |||     | |  | |  | ||||| |  |  |  |      ||  || ||   | |  || || | ||      ||||| |||    ||||         |                                                                            
AAAGGAGCAAATTGGTAAAAATATATATTTTGACCTGGTGGACCATGAAAAAGTTTGCAGCTTCCGCATTCAGAAGCAGTTGCCTTTTACTGCATTCCAGgtaatggcccaaaaaaccct-acatgtttttacttagcattatg---gtttttggatactaca--ggcctatttgcacgggattgagctg---ctcatttatggttgtt---------------------------------------------------------------------------

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 15
TAAGGAACAAATTGGGAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTTCGCAGTTTCCGTATCCAGAAACAGACACCATTTCAACAGTTTAAGgtacttgcctgcgtatctttgatttattttttccaaaaaggaaataaattagtgtatgtgaaaacggtctttctggtaacaattgatctggatttcatgagaaaccttcaaaattctgctgactaaaaaagttctttatgtacaatttaagcaatcgttgaccttcaattttatgctgatatag
|   || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||   || |||   |  || ||||||       |  ||  |  | ||| | | |   |  |   |  |||||| ||     ||  | |    || |  ||  |  || ||      |||  |                                                                                     
TGCAGAGCAAATTGGAAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTCCGCAGTTTTCGCATTCAGAAACAGTGGCCTTTTACCCTTTTCAAGgtata-----gtttacttcggttttgtctctgatatgataaagttaaatttgttctattgttatcatcattgccagtttct-ttaattgaagcttcgggtactggt------------------------------------------------------------------------------

upper sequence: AT5G06600.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: PP1S42_181V6.1 (Physcomitrella patens), 5'ss of exon 15
TAAGGAACAAATTGGGAAGGATATATATTTTGATCTTGTGGATCATGACAAAGTTCGCAGTTTCCGTATCCAGAAACAGACACCATTTCAACAGTTTAAGgtacttgcctgcgtatctttgatttattttttccaaaaaggaaataaattagtgtatgtgaaaacggtctttctggtaacaattgatctggatttcatgagaaaccttcaaaattctgctgactaaaaaagttctttatgtacaatttaagcaatcgttgaccttcaattttatgctgatatag
  || | || ||||| ||||| ||  |||||||| | ||||||||||| |||||||||||||| || |||||||| || || || ||    ||||| ||||||                       | | |||  | || |   || ||  || |||    || |  | || ||| ||  ||         |  | |||      ||||          |||  ||     |  |  |  |||||||  ||                                 
CCAGAACCAGATTGGAAAGGACATTCATTTTGATTTGGTGGATCATGAGAAAGTTCGCAGTTTTCGCATCCAGAAGCAAACGCCTTTCACGCAGTTCAAGgta-----------------------tgtcttctcagaaagttttacatccgtttat----aagcacttttactgataggaa---------acataatgtagtgtcttcgttgaatcattgagcaa-----tcgtgcacctacaattgcag---------------------------------