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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTCTAGTTTGGGACAGTTTTTCAGTCAGTATCTGGAACCTATAAAGCTAAACGATGTGACGgtaagcgtaagtgtgttttttacccccttttgttgcatcactagttttcactggtttcctatttcattcataaag

Basic information

species Arabidopsis thaliana
transcript AT4G38240.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38240.3 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: EFJ19102 (Selaginella moellendorffii), 5'ss of exon 13
GGGTCTAGTTTGGGACAGTTTTTCAGTCAGTATCTGGAACCTATAAAGCTAAACGATGTGACGgtaagcgtaagtgtgttttttacccccttttgttgcatcactagttttcactggtttcctatttcattcataaag
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GGATCCAGTTTCGGACAGTTTTTCAGGCAGTACCTAGAAACGATAAAGCTCAACGATGTTCAGgtaatttcaa-cgtgga----aaaatctcatga-acaactgtcattcgcgcag----------------------