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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCGCAGAGCTTATATTTGCACCAATCGACGCATCTTTCTCTGATGATGCACCAATCATTCCTTCCGGTTTCCGCATCATTCCTCTAGATTCCAAATCAgtacgttcaattcatataacaatcaaaatcattaactttagttgaatcaaatactaatttataaatcgaattatgtatag

Basic information

species Arabidopsis thaliana
transcript AT4G32880.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32880.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA06G09100.2 (Glycine max), 5'ss of exon 5
ATGCGCAGAGCTTATATTTGCACCAATCGACGCATCTTTCTCTGATGATGCACCAATCATTCCTTCCGGTTTCCGCATCATTCCTCTAGATTCCAAATCAgtacgttcaattcatataacaatcaaaatcatta-actttagttgaa-tcaaatactaatttataaatcgaattatgtatag------------------------------------------
  | ||||| ||| | ||||| ||||| |||||||||||||||||||||||||| ||  | ||||| ||||| |||||||| |||||||||||     ||||| ||  |  | |  || ||   |   | |||  | | |  ||||| |    |  |    ||   ||   ||| | | |                                            
CAGTGCAGAACTTGTTTTTGCTCCAATTGACGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAgtaagtcta--ttagctagcatatagtttgattgtattgtttttgaaattggttgtttgagtaaggatttgattttctgttttctgttattttggtggtctcatattgatgtgatatgatgcag

upper sequence: AT4G32880.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA04G09000.1 (Glycine max), 5'ss of exon 11
ATGCGCAGAGCTTATATTTGCACCAATCGACGCATCTTTCTCTGATGATGCACCAATCATTCCTTCCGGTTTCCGCATCATTCCTCTAGATTCCAAATCAgtacgt---tcaattcatataacaatcaaaatcattaacttt--agttgaa---tcaaatactaatttataaatcgaattatgtatag-------------------------------------
  ||||||| ||| | ||||| |||||||| |||||||||||||||||||| || ||  | ||||| ||||| |||||||| ||||| |||||     ||||| ||   | |  |   |||    |  |    |||   |||  | |||     | || ||   ||||  |  |    || | | |                                       
CAGCGCAGAACTTGTTTTTGCTCCAATCGATGCATCTTTCTCTGATGATGCGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctattagctagcatatagtttgattgtattgtttttgaaattggttgtttaagtaaggattttgattttctgttttctgttatattgttggtctcttatagtgatatgatatgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830963|gb|CK120647.1|CK120647
EST:     CACCAATCATTCCTTCCGGTTTCCGCATCATTCCTCTAGATTCCAAATCA                         GAGGGGTTGAGTCCTAACCGAACGCTAGACCTAGCGTCGGCTCTAGACGTA
genomic: CACCAATCATTCCTTCCGGTTTCCGCATCATTCCTCTAGATTCCAAATCAgtacgttcaa ... ttatgtatagGAGGGGTTGAGTCCTAACCGAACGCTAGACCTAGCGTCGGCTCTAGACGTA
EST: gi|47830450|gb|CK120134.1|CK120134
EST:     CACCAATCATTCCTTCCGGTTTCCGCATCATTCCTCTAGATTCCAAATCA                         GAGGGGTTGAGTCCTAACCGAACGCTAGACCTAGCGTCGGCTCTAGACGTA
genomic: CACCAATCATTCCTTCCGGTTTCCGCATCATTCCTCTAGATTCCAAATCAgtacgttcaa ... ttatgtatagGAGGGGTTGAGTCCTAACCGAACGCTAGACCTAGCGTCGGCTCTAGACGTA