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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAAAATTCATGGCGTGGAAAGTGATATTGCGGAAGAGCGTCTTCAGTTCTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATGgtatatttattacttgaagctaaatcagttaaagtaaagaatctgattccttttgtgtttgctgggacag

Basic information

species Arabidopsis thaliana
transcript AT4G25070.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25070.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA06G17390.1 (Glycine max), 5'ss of exon 16
GCTAAAATTCATGGCGTGGAAAGTGATATTGCGGAAGAGCGTCTTCAGTTCTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATGgtatatttattacttgaagctaaatcagtt-aaagtaaagaatct--gattccttttgtgtttgctgggacag---------------------------
|||  | ||||| ||||||||   |||||||| ||||||||||||||||| |||||   |||    |||||     ||  ||||||||||||  |||||||||   |  ||  |||    | |   | || |||||||| | |||   | |      | ||||  |      |                           
GCTTTATTTCATTGCGTGGAAGAAGATATTGCAGAAGAGCGTCTTCAGTTTTGGATTGCCCGCAGTGGGCAGTCACCAAGTTCACATGATGCTGTTGATGgtaagctcttttgttgttttttaccaattttaaagtaaacagtcttgaaattacagagggtttaatatatacgtgttttttgaattgtgtgctgattggc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124834063|gb|EH918502.1|EH918502
EST:     CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATG                         TGGAAAGAGGAATGAGGGAGC
genomic: CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATGgtatatttat ... gctgggacagTGGAAAGAGGAATGAGGGAGC
EST: gi|116426415|gb|EG469007.1|EG469007
EST:     CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATG                         TGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGT
genomic: CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATGgtatatttat ... gctgggacagTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGT
EST: gi|116426421|gb|EG469013.1|EG469013
EST:     TTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATG                         TGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGT
genomic: CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATGgtatatttat ... gctgggacagTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGT