1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGATGCTATGGAAAATGTTTTACCTGCCAAGTATGAGGAGGCAAGAGAAGAGGAGAAATTGCGCAATAAGCCAGTGGACTTGAGTGACATGGTCGTCGAGgtaatgactttctttatatttatatctctatttttttcaacactattgatatgaatgcggatgaataatcaaacgtttacttggtggaatgtttaacag
species | Arabidopsis thaliana |
transcript | AT4G21660.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TTGCGCAATAAGCCAGTGGACTTGAGTGACATGGTCGTCGAG CATGTGCAGCAGAATAGTAGGAAGAGGAAAATGCATGACAAGGAAGEST: gi|164208541|gb|ES083544.1|ES083544
genomic: TTGCGCAATAAGCCAGTGGACTTGAGTGACATGGTCGTCGAGgtaatgactt ... tgtttaacagCATGTGCAGCAGAATAGTAGGAAGAGGAAAATGCATGACAAGGAAG
EST: AAGCCAGTGGACTTGAGTGACATGGTCGTCGAG CATGTGCAGCAGAATAGTAGGAAGGGGAAAATGCATGACAAGGAAGGGAAGEST: gi|116469976|gb|EG512568.1|EG512568
genomic: AAGCCAGTGGACTTGAGTGACATGGTCGTCGAGgtaatgactt ... tgtttaacagCATGTGCAGCAGAATAGTAGGAAGAGGAAAATGCATGACAAGGAAGGGAAG
EST: AGGAGAAATTGCGCAATAAGCCAGTGGACTTGAGTGACATGGTCGTCGAG CATGTGCAGCAGAATAGTAGGAAGAGGAAAATGCATGACAAGGAAGGGAAGEST: gi|124955500|gb|EL030509.1|EL030509
genomic: AGGAGAAATTGCGCAATAAGCCAGTGGACTTGAGTGACATGGTCGTCGAGgtaatgactt ... tgtttaacagCATGTGCAGCAGAATAGTAGGAAGAGGAAAATGCATGACAAGGAAGGGAAG
EST: TAAGCCAGTGGACTTGAGTGACATGGTCGTCGAG CATGTGCAGCAGAATAGTA
genomic: TAAGCCAGTGGACTTGAGTGACATGGTCGTCGAGgtaatgactt ... tgtttaacagCATGTGCAGCAGAATAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGCTATGGAAAATGTTTTACCTGCCAAGTATGAGGAGGCAAGAGAAGAGGAGAAATTGCGCAATAAGCCAGTGGACTTGAGTGACATGGTCGTCGAGgtaatgactttctttatatttatatctctatttttttcaacactattgatatgaatgcggatgaataatcaaacgtttacttggtggaatgtttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA