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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTGATATGGTTAATCAAGATGGGACGAGAAACACTAAACCCGTGAGAAGTTCTGTCAGAGACTCCAAATACAGACCACCCGGAAAAAAGAGTCCTCgtaagtaaaaaaagctataaacccacctttttttctttaacatgtacaatcgttgttttacttcatctaacaaaacaaatccattcaattggagataatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G19110.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124911928|gb|EH986008.1|EH986008
EST:     ACTCCAAATACAGACCACCCGGAAAAAAGAGTCCTC                         CAGCAGCATCGTTGAACAAGAACCGGGTCACTCGTAGTAGTGTATCCGAGA
genomic: ACTCCAAATACAGACCACCCGGAAAAAAGAGTCCTCgtaagtaaaa ... gataatgcagCAGCAGCATCGTTGAACAAGAACCGGGTCACTCGTAGTAGTGTATCCGAGA
EST: gi|163968073|gb|EL976037.1|EL976037
EST:     AATACAGACCACCCGGAAAAAAGAGTCCTC                         CAGCAGCATCATTGAACAAGAACCGGGTCACTCGTAGTAGTGTATCCGAGA
genomic: AATACAGACCACCCGGAAAAAAGAGTCCTCgtaagtaaaa ... gataatgcagCAGCAGCATCGTTGAACAAGAACCGGGTCACTCGTAGTAGTGTATCCGAGA
EST: gi|124761542|gb|EH851672.1|EH851672
EST:     ACTCCAAATACAGACCACCCGGAAAAAAGAGTCCTC                         CAGCAGCATCGTTGAACAAGAACCGGGTCACTCGTAAGTAGTGTATCCGAG
genomic: ACTCCAAATACAGACCACCCGGAAAAAAGAGTCCTCgtaagtaaaa ... gataatgcagCAGCAGCATCGTTGAACAAGAACCGGGTCACTCGTA-GTAGTGTATCCGAG