1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGCTTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAGgtttttaaagaatcatcaatttttcgatttttccgggttgctattcaaaaagttaaatttctgaattgggctgttttgtgtgttgtttgtttgtttcag
species | Arabidopsis thaliana |
transcript | AT4G18810.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TATGCATCGCTGCTTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAG GTTAAAAGTACGGTTCCGTTTAGCGAGCCTTTCACGGTAGEST: gi|124763988|gb|EH854118.1|EH854118
genomic: TATGCATCGCTGCTTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAGgtttttaaag ... tttgtttcagGTTAAAAGTACGGTTCCGTTTAGCGAGCCTTTCACGGTAG
EST: CTCTTAACAAGACCTTCGAG GTTAAAAGTACGGTTCCGTTTAGCGAGCCTTTCACGGTAGATCCTGAGAATEST: gi|125281866|gb|EL295951.1|EL295951
genomic: CTCTTAACAAGACCTTCGAGgtttttaaag ... tttgtttcagGTTAAAAGTACGGTTCCGTTTAGCGAGCCTTTCACGGTAGATCCTGAGAAT
EST: CTTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAG GTTAAAAGTACGGTTCCGTTTAGCGAGCCTTTCACGGTAGATCCTGAGAATEST: gi|116396417|gb|EG439009.1|EG439009
genomic: CTTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAGgtttttaaag ... tttgtttcagGTTAAAAGTACGGTTCCGTTTAGCGAGCCTTTCACGGTAGATCCTGAGAAT
EST: TATGCATCGCTGCTTTAGAAAGCCCGTATGCTTTTAACAAGCCCTTGGAG GTTAAAAGTACGGTTCCGTTTAGCGACCCTTTCACGGTAGATCCTGAGAATEST: gi|116396418|gb|EG439010.1|EG439010
genomic: TATGCATCGCTGCTTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAGgtttttaaag ... tttgtttcagGTTAAAAGTACGGTTCCGTTTAGCGAGCCTTTCACGGTAGATCCTGAGAAT
EST: TATGCATCGCTGCTTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAG GTTAAAAGTACGGTTCCGTTTAGCGAGCCTTTCACGGTAGATCCTGAGAAT
genomic: TATGCATCGCTGCTTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAGgtttttaaag ... tttgtttcagGTTAAAAGTACGGTTCCGTTTAGCGAGCCTTTCACGGTAGATCCTGAGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGCTTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAGgtttttaaagaatcatcaatttttcgatttttccgggttgctattcaaaaagttaaatttctgaattgggctgttttgtgtgttgtttgtttgtttcag
- - - - - - - - - - - - - - - - - - - GCTGCT