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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATGgtgtgctccattttccattcttttatataactactgtacttcagcaatgtgactggtagttatgactcacattacatgtttttattttactttag

Basic information

species Arabidopsis thaliana
transcript AT3G43300.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 5'ss of exon 13
GATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATGgtgtgctccatt--ttccattctt---ttatataactactgtacttcagcaatgtgactggtagttatgactcacattacatgtttttattttactttag
|||||| |||||||||||||| ||| | || |||||||  ||  ||| |||||| ||||||||||| || ||||  |||||| | ||||| ||||||||| || | ||   ||  ||| ||    || | ||||| | |   |    | | |  |     | |||  || |    |||||| |   | | |      
GATGCTGGAGAAAGTCTGCAAGGATTCACAAATGCTTGCAGACATGTTTGTAAATTATGATTGTGACCTTGAGGGGCCAAACCTTTTTGAACGCATGgtgagcacaatgaattttatttttacactagaaaactagtatctcttctaactatctccacatgatatatctgattgaacatgtatcactatcag-----

upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G335287_T01 (Zea mays), 5'ss of exon 14
GATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATGgtgtgctccattttccattctttt----atataactactgtacttca---gcaatgtgactggtagttatgactcacattacat---gtttttattttactttag-----
|||| | |||||||| ||||||||||| || |||||||  ||||||| ||| |||||||| |||||||| ||||  |||||  | ||||| |||| |||   |    ||||  | | |       | ||| || ||| | |||      ||||||  |  |  || || ||  ||  ||||     |  || | ||  |        
GATGTTGGAGAAAGTTTGCAAAGATCCCCAAATGCTTGCAGATGTGTTTGTGAACTATGACTGTGATCTTGAGGGACCAAATCTTTTTGAACGCACGgtaatcatattttttaaatgtccagaaaacatagcttctgaatttctcataaaatgtgtttttttctt-tggcttgcaacacatctgactgataatctatctcctaccag

upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 16
GATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATGgtgt-gctccattttccattcttttatataactac--------tgtacttcagcaatg---tgactggtagttatgactcacattacatgtttttattttactttag------
|||| | |||||||| || || ||||| ||||||||||||||  | | ||| || |||||||||||||| ||||| |||||||||||||| || ||||| |      |     || ||||||||   | ||         ||||  | ||  |||   |   |||||  ||| | | | | |   |||| || |  || |  |       
GATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgtaaattagttatgacctctttggtaaatataa-taataatctctgttattttcctattcaatttgtag

upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 16
GATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATGgtgt-gctccattttccattcttttatataactac--------tgtacttcagcaatgtgac---tggtagttatgactcacattacatgtttttattttactttag-------
|||| | |||||||| || || || || ||||||||||||||  | | ||| || |||||||||||||| ||||| |||||||||||||| || ||||| |      |     || ||||||||   | ||         || |  | ||  ||||      |||||  ||| | | | | |   |||| || ||  | || |        
GATGTTAGAGAAAGTATGTAAGGACCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgaaaattagttatgtcctctttggtaaatataa-taataatctctgttatt-ttccaattcaatttgtag

upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 16
GATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATGgtgtgctccatttt-ccattcttttatataactactgtacttcagcaatgtgactggtagttatgact-cacattacatgtttttattttactttag----------
||||||||||||||| || |||||||| ||||||||||||||  | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |  || |   |   |||   |||||    |  | |  |       | ||  || |  |  ||  |  |  | | | |  |  ||||| | ||            
GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgtataatctaacatattattgcattataatgtttatttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttatcatttag