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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATTAGACTGATTACTTTTACAAGTGGTGGCCGTGCATACCTCAATTTCATGGGAAATGAATTTGGACATCCTGAGgtaaatctacaaactcccactgttctaaagacatcatcttcatgtttctgattctgacgtttcatccttgtgtcag

Basic information

species Arabidopsis thaliana
transcript AT3G20440.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20440.3 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: LOC_Os06g26234.2 (Oryza sativa), 5'ss of exon 15
ATGATTAGACTGATTACTTTTACAAGTGGTGGCCGTGCATACCTCAATTTCATGGGAAATGAATTTGGACATCCTGAGgtaa---atctacaa-actcccactgttctaaag----acatcatcttcatgtttctgattctgacgtttcatcctt-gtgtcag-------------------------------
|| || | ||| |||||||||||||   ||||  ||||||| ||||| ||||| ||||||||||||| ||||||  |||| |   | |||||  ||   ||   ||  | ||    || |||  ||||  ||| |||   |||  | ||||  || |    ||                               
ATAATCAAACTAATTACTTTTACAACAAGTGGTGGTGCATATCTCAACTTCATTGGAAATGAATTTGCACATCCAAAGgtgaggtacctacattacattcagaatttgatagccttacttcaatttcaattttgtgagcttgatctctcattttttgcagtagaccttctaagcattttttgttattatttcag

upper sequence: AT3G20440.3 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv19s0090g00920.t01 (Vitis vinifera), 5'ss of exon 15
ATGATTAGACTGATTACTTTTACAAGTGGTGGCCGTGCATACCTCAATTTCATGGGAAATGAATTTGGACATCCTGAGgtaaatctacaaactcccac-tgttc-taaagacatcatcttcatgtttctgattctgacgtttcatccttgtgtcag
||||| ||| |||||||  |||||| |||||||| ||| |||||||| |||||||||||||||||||| |||||  ||| |  | ||||  | |     | | | | ||||| | |  || | | |  | |  ||    |||  | |         
ATGATCAGATTGATTACACTTACAATTGGTGGCCATGCTTACCTCAACTTCATGGGAAATGAATTTGGGCATCCAAAGgcaggt-tacattcccttggatatccatgaagactttacttttaagctattaacacttttttttttttcccag-----