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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCAAGCTTGCTCCTTCCTCTGAGAGAATTGTGTACGCATTGGTCCAACAGATATTCCAGGGCATACGAGAGTACTTTCTCGCCTCTGCTGAGTTAAAGgtttgctcctacttcagtttttactcagattcttcttgcttttaaaatgacttttcttttaaaaagtttgtatctgtgttttcttttgttctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G19720.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19720.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: Vv12s0055g00490.t01 (Vitis vinifera), 5'ss of exon 15
CCGCAAGCTTGCTCCTTCCTCTGAGAGAATTGTGTACGCATTGGTCCAACAGATATTCCAGGGCATACGAGAGTACTTTCTCGCCTCTGCTGAGTTAAAGgtttgctcctacttcagtttttactca--gattcttcttgcttttaaaatgacttttcttttaaaaagtttgtatctgtgttttcttttgttctgcag-------
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TCGAAGGCTTGCTCCTTCATCTGAAAGGATTGTATATGCTTTGGTACAACAGATATTCCATGGCATAAGAGAATATTTCTTGGCATCTGCAGAACTTAAGgtttgtgcatatgtttgctggttctcaatgaatcttagtgctgt-----tggttttcttgggcgagaatacctacctattgatggatatttcaagcatggtgctg