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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGCTCCCATTTATTTTGCCAACATAAGCTACATCAAGGACAGgtgaaattgacatttggttcctgacttgctttctgttatgatccacataaagaatcaacacaacaacaccatgtttcgaaattgcag

Basic information

species Arabidopsis thaliana
transcript AT3G12520.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: LOC_Os09g06499.1 (Oryza sativa), 5'ss of exon 15
ACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGCTCCCATTTATTTTGCCAACATAAGCTACATCAAGGACAGgtgaaattgacatttggttcctgacttgctttctgttatgatccacataaagaatcaacacaacaacacc-atgtttcga-aattgcag----------
| |     || || || ||||| || || ||||||||||| ||  |||||||||| ||||| || || || |||||||||||||| ||||| || |||||||| |  |    |||   |          ||| |||||| |      |     | |   |   |   |   |||||| |   ||||             
ATAGATTGCAATACCCTGAGGCTTATACCTACAACGGGATAGTTGTTGTTCGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAGgtggatattttttttatctgtatgaacagtttgtgttatcaattttttttcttaccctgatgtcctgatggatgttttgttgattgtgtcccttatcag

upper sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G068212_T01 (Zea mays), 5'ss of exon 14
ACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGCTCCCATTTATTTTGCCAACATAAGCTACATCAAGGACAGgtgaaattgacatttggttcctgacttgctttctgttatga-tccacataaagaatcaacacaacaacaccatgtt---tcgaaattgcag-----------
| |     ||||| || ||||| || || || || ||||| ||  | |||||||| ||||| || || || ||||||||||| ||||||||||| |||||||  | | |    |  ||||  | | ||  |      |||| |  |  |  |  ||  |||    ||    |  |    | | |||   |            
ATACATTGCAGTACCCTGAGGCTTATACGTATAATGGGATAGTAGTGGTTCGAATTGATGCACCGATCTACTTTGCCAACATTAGCTACATCAAAGACAGgtagattggttggtctgttctcgtcatgtgtaaacacatgaataaattttcatcatttacaaggaaatgttagttctactggtaatcataatcttttgtcag

upper sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 14
ACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGCTCCCATTTATTTTGCCAACATAAGCTACATCAAGGACAGgtgaaattgacatttggttcctgacttgctttctgttatgatccacataaagaatcaacacaacaacaccatgtttcgaaattgcag
   | ||||||||||| || ||||| || ||||| || ||||| || |||||  | |||||||| ||||||||||| |||| ||| |||||||||||||||| |   ||| |  ||  |  | | |  | || |   |  ||| | |    |  | ||  ||   | |      ||   |       
-TGTTAAACAGTATCCTGAAGCATATACATACAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGtaa---tgagaagtgagttgtaattgacattttccca--atcaagagcgtgccttaattcatttagagttctcttatcagg-----

upper sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA02G10590.1 (Glycine max), 5'ss of exon 14
ACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGCTCCCATTTATTTTGCCAACATAAGCTACATCAAGGACAGgtgaaattgacatttggttcctgacttgctttctgttatgatccacataaagaatcaacacaacaacaccatgtttcgaaattgcag
|  | |||||||| || || ||||| || || || || ||||| || |||||  | |||||||| ||||||||||| |||| ||| ||||| |||||||||| |   ||| |  ||  |  | | |  | || |   |  ||| | |    |  | ||  ||   | |      ||   |       
ATGTTAAACAGTACCCTGAAGCATATACATATAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATAAAGGACAGgtaa---tgagaaatgagttgtaattgacatttttcca--atcaagagcctgccttaattcatttagagttctcttatcag------

upper sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 14
ACATGAAACAGTATCCAGAGGCATACACTTACAACGGGATTGTGATTGTTCGAATCGATGCTCCCATTTATTTTGCCAACATAAGCTACATCAAGGACAGgtgaaattgacatttggttcctgac-ttgctttctgttatgatccacataaagaatcaacacaacaacaccatgtttcgaa-----attgcag--------------------------------------------------------
||||  | || |||||||| ||||| || ||| | ||||||||||||||||| || ||||| |||||||||||||| || |||||  |||| || || ||||||||   | || || ||||| || ||||| | |   | |  ||  ||      | |   || |   |  || |||| ||      ||  ||                                                        
ACATTCAGCAATATCCAGAAGCATATACATACCATGGGATTGTGATTGTTCGGATTGATGCACCCATTTATTTTGCAAATATAAGTCACATAAAAGAAAGgtgaaa---agatgtgcttccttacattgctattttccaggcacctgatgttttcttattgca-ctgtatgatttttctaatatcggttatagttcataattccctaattaaaaaataacttttaaattattgagctgttctctgccag