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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACGgtatctctcacttacttttccgttcgaatggttactcaggaagataaggcaataatctcaaattgttaaattggtttcag

Basic information

species Arabidopsis thaliana
transcript AT3G10740.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10740.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA19G30150.1 (Glycine max), 5'ss of exon 15
TGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACGgtatctctcacttacttttccgttcgaatggttactcaggaagataaggcaataatctcaaattgttaaattggtttcag---------------------------------------
|||  | ||| | ||||  |||||||| ||||||||||| |||||||||||||||  |||  | || |  |||||  | |  |  |  ||  |||      |    |||| ||||    || ||||  |  ||| |                                        
TGATGTCGTTCACATGGTCAGTTATGCGCCACTCTTTGTAAACACAAATGATAGAAAgtaattttctcacactttatcataggttttttttatca------tctaacaatcatcttttttttttaatcttattttatgatgtgtggatcgatattatttaatttttatggcaacag

upper sequence: AT3G10740.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: EFJ07270 (Selaginella moellendorffii), 5'ss of exon 14
TGACATTGTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACGgtatctctcacttacttttccgttc--gaatggttactcaggaagataaggcaataatctcaaattgttaaattggtttcag
|||||| || ||||||||||| ||||||||| | ||||| ||||||||  | || ||||||     |||   || |  ||||   |||  ||||| |  |   |  |    |  |||                      
TGACATAGTCGAAATGGCAAGCTATGCTCCATTGTTTGTCAACACAAACAACAGGCGgtatggaa-actattttctaagttctcaaatttttactgacaagctttggtatcttgtctag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125287444|gb|EL301529.1|EL301529
EST:     GTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACG                         GTGGAACCCTGATGCAATAGTCTTCAACTCCTCTCATCTA
genomic: GTTGAAATGGCAAGTTATGCTCCACTCTTTGTGAACACAAATGATAGACGgtatctctca ... ttggtttcagGTGGAACCCTGATGCAATAGTCTTCAACTCCTCTCATCTA