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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGACAAACGCCTTGTCTACAACACGATCTCAGCACTCATAATCTGCACTTGTCTCTACTTTTTCTCATTTATTCTTATCACAATTCCCCAAAAACTGgtaagtcaaaattttatctttttgtgtgggagaaagcttttttttccctggtacttgagttcattgatatgttagtgcatacacaaagcgaggacgaatgtcatcctctcatattcgattgaaccatctcacgttttattatttcactggaaacaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G06550.3
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164029691|gb|ES082533.1|ES082533
EST:     TTATCACAATTCCCCAAAAACTG                         GTGTGAAGCACTTCTGAACCGGACCAGAGTGGACTATTCGAATGAATTCAT
genomic: TTATCACAATTCCCCAAAAACTGgtaagtcaaa ... aaacaaacagGTGTGAAGCACTTCTGAACCGGACCAGAGTGGACTATTCGAATGAATTCAT
EST: gi|124767125|gb|EH857255.1|EH857255
EST:     TTCTTATCACAATTCCCCAAAAACTG                         GTGTGAAGCACTTCTGAACCGGACCAGAGTGGACTATTCGAATGAATTCA
genomic: TTCTTATCACAATTCCCCAAAAACTGgtaagtcaaa ... aaacaaacagGTGTGAAGCACTTCTGAACCGGACCAGAGTGGACTATTCGAATGAATTCA