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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCACTTGGCTGCTACGTTTCTAACATGCCATAGCATCGCACATGGAATCAATCTGCGAAAGTCTCCTGTGCTTCAGTATCTGTACTACCTCGCCCAGgtttgtggagactgcctgcatgtattacatatgtattattgtttctgttctaagaagacatttcttttgacag

Basic information

species Arabidopsis thaliana
transcript AT2G38280.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38280.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G416667_T01 (Zea mays), 5'ss of exon 15
TGACCACTTGGCTGCTACGTTTCTAACATGCCATAGCATCGCACATGGAATCAATCTGCGAAAGTCTCCTGTGCTTCAGTATCTGTACTACCTCGCCCAGgtt-tgtggagactgcctgcatgtatta-catatgtattattgtttctg---ttctaagaagacattt-cttttgacag---------------------
||| |||||||| || || |||||    || || | |||  |||||||||| |||||  | ||||||||||||||||||||  ||||||| || |  |||||  | ||    |    | |||     | |||   | |  |   |||||   ||||  || |   ||| ||||   |||                     
TGATCACTTGGCAGCGACATTTCTTCTCTGTCACAACATATCACATGGAATTAATCTAAGGAAGTCTCCTGTGCTTCAGTACTTGTACTATCTTGGTCAGgtaatatgttaccaagttccataacccagcatgattttggtctcttctgatattcttcgatggtgtttactttctccagtacttgtatcttccattccag

upper sequence: AT2G38280.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 15
TGACCACTTGGCTGCTACGTTTCTAACATGCCATAGCATCGCACATGGAATCAATCTGCGAAAGTCTCCTGTGCTTCAGTATCTGTACTACCTCGCCCAGgtttgtggagactgcctgcatgtattacatatgtat-tattgtttctgttctaagaagacatttcttttgacag-------------------
||||||| | ||||| || ||||| || |  || |  || ||||||||||| ||| || |||| |||||||| |||||||||||||| ||| | || |||||     | ||     ||| ||| ||  |||| | |  | ||  |   || |   |    || |  || |                       
TGACCACCTTGCTGCAACCTTTCTTACGTCTCACAATATTGCACATGGAATTAATTTGAGAAAATCTCCTGTACTTCAGTATCTGTATTACTTAGCACAGgtaaaaagggagatgatgc-tgttttgaatatatctacactgacttgattattccatagtatctgattggctgtgattgcatgttggttacag