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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAAAGAGGCAGAATACTACAACTGGACTTAGGACCTGTAATAACATATTGGCGATGACAAAGgtgaacattccaacatcttgtttttccccctttttgtcctttctttggtcgaagcatatagttatgatgatataaactaaacttggagttaattttgatatgaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G34040.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164063113|gb|ES146838.1|ES146838
EST:     TTGGCTATGACAAAG                         CCATTGCATGCAAAAGTGCCACCTTTTATGGGAGACACTAATCTCAACCTG
genomic: TTGGCGATGACAAAGgtgaacattc ... tatgaaacagCCATTGCATGCAAAAGTGCCACCTTTTATCGGAGACACTAATCTCAACCTG
EST: gi|125107484|gb|EL160772.1|EL160772
EST:     GTAAGTAACATATTGGCGATGACAAAG                         CCATTGCATGCAAAAGTGCCACCTTTTATCGGAGACACTAAT
genomic: GTAA-TAACATATTGGCGATGACAAAGgtgaacattc ... tatgaaacagCCATTGCATGCAAAAGTGCCACCTTTTATCGGAGACACTAAT
EST: gi|86076432|gb|DR372189.1|DR372189
EST:     ATACTACAACTGGACTTAGGACCTGTAATAACATATTGGCGATGACAAAG                         CCATTGCATGCAAAAGTGCCACCTTTTATCGGAGACACTAATCTCAACCTG
genomic: ATACTACAACTGGACTTAGGACCTGTAATAACATATTGGCGATGACAAAGgtgaacattc ... tatgaaacagCCATTGCATGCAAAAGTGCCACCTTTTATCGGAGACACTAATCTCAACCTG
EST: gi|125122077|gb|EL168898.1|EL168898
EST:     TACTACAACTGGACTTAGGACCTGTAATAACATATTGGCGATGAACAAAG                         CCATTGCATGCAAAAGTG
genomic: TACTACAACTGGACTTAGGACCTGTAATAACATATTGGCGATGA-CAAAGgtgaacattc ... tatgaaacagCCATTGCATGCAAAAGTG