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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATATGATGGTATGATTATCGGTGAGCATTCACGAGAAACAGATCTTGATgtaagtttgttcgacttctcctcttcatactaaattgtcgaaatgccatgagctcacttgcccttgcactgcag

Basic information

species Arabidopsis thaliana
transcript AT2G31060.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 16
TCATATGATGGTATGATTATCGGTGAGCATTCACGAGAAACAGATCTTGATgtaag--tttgttcgacttctcctcttcatactaaattgtcgaaatgccatgagctcacttgcc--cttgcactgcag
 | |||||||| |||||| | || || |||||||| || |||||||||||||||||   |  |   | ||    | |   |  || ||     ||| |   ||| ||| ||  |   ||   | | |||
GCGTATGATGGAATGATTGTTGGAGAACATTCACGCGATACAGATCTTGATgtaagaagtattcttagtttgaatgtaagtgttatatc----aaaggtggtga-ctcgctgacagactgatatttcag

upper sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 16
TCATATGATGGTATGATTATCGGTGAGCATTCACGAGAAACAGATCTTGATgtaagtttgttcgacttctcctcttcatactaaattgtcgaaatgccatgagctcacttgcccttgcactgcag-----------
 | |||||||| |||||| | ||||| ||||| || || |||||||||||||||||       ||||  |||||  |||  |||  ||| |   ||     || | |||   | |   | |   |           
ACTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGATgtaaggagaaatgactcttcctca-cat-ttaatgtgttgtgttggttctaggtgactgaacttgctattattgtggttaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116424469|gb|EG467061.1|EG467061
EST:     CATATGATGGTATGATTATCGGTGAGCATTCACGAGAAACAGATCTTGAT                         CTTAACCCAGTTAAGGCCAAAGAACTTACAAACATTCGCTCTGCTGGGAAA
genomic: CATATGATGGTATGATTATCGGTGAGCATTCACGAGAAACAGATCTTGATgtaagtttgt ... tgcactgcagCTTAACCCAGTTAAGGCCAAAGAACTTACAAACATTCGCTCTGCTGGGAAA