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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTATATTTGCTTTGATGGATCGAAGTGAGGCAGAACTGGGTGATGCCCTCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAGgttagcaatgtgttttacataatctcgctctttgttcgtatatcattatttgcattgcttgaccaacatcaacttgttccaatatctaccag

Basic information

species Arabidopsis thaliana
transcript AT2G20580.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 17
TATTATATTTGCTTTGATGGATCGAAGTGAGGCAGAACTGGGTGATGCCCTCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAGgttag-caatgtgttttacataatctcgctctttgttcgtat--atcattatttgcattgcttgaccaacatcaacttgttccaatatctaccag--------
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TATTATATTTGCTTTGATGGAGCGTAGTGAGGCCGAGTTGGCAGAACCCATTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaagcatcctgta-gatatggttctgatttcgaattaataatttgctgctaggcttagc--atatccatctaaagtattgcttgttgcttctaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86050680|gb|DR346435.1|DR346435
EST:     TCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAG                         GAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
genomic: TCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAGgttagcaatg ... tatctaccagGAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
EST: gi|116456407|gb|EG498999.1|EG498999
EST:     TCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAG                         GAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
genomic: TCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAGgttagcaatg ... tatctaccagGAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
EST: gi|163986789|gb|ES110553.1|ES110553
EST:     ACTTGGTCTTGGACTTCTATACCTGGGCAAACAG                         GAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
genomic: ACTTGGTCTTGGACTTCTATACCTGGGCAAACAGgttagcaatg ... tatctaccagGAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
EST: gi|86050681|gb|DR346436.1|DR346436
EST:     TCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAG                         GAAAGTGTATAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
genomic: TCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAGgttagcaatg ... tatctaccagGAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
EST: gi|86050682|gb|DR346437.1|DR346437
EST:     TCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAG                         GAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
genomic: TCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAGgttagcaatg ... tatctaccagGAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
EST: gi|164092461|gb|ES059568.1|ES059568
EST:     TTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAG                         GAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT
genomic: TTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAGgttagcaatg ... tatctaccagGAAAGTGTAGAGGCTACAGCTGAAGTTTCGAAGACCTTCAATGAGAAGATT