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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGGTCATGTAGGACATTGCAACCAGGGAAACAACATGTATCTATTTCCAGGgttggttcctcttgtttattgtccgaaagaattgcatacattcttgaattgatacattaattgtcatgaaataaattgattttctaatcctgtaaaatttattgtag

Basic information

species Arabidopsis thaliana
transcript AT2G13560.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G13560.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA03G24630.1 (Glycine max), 5'ss of exon 15
GAAATGGTCATGTAGGACATTGCAACCAGGGAAACAACATGTATCTATTTCCAGGgttggttcctcttgtttattgtccgaaagaattgcatacattcttgaattg-ataca-ttaattgtcatgaaataaattgattttctaatcctgtaaaatttattgtag
||||||||||| | || |||||||||||||||||||||||||| || ||||||||||| |||                    | | || ||||| || ||  || | ||||| |||||| |  |  || | ||    ||| |  ||| |               
GAAATGGTCATATTGGCCATTGCAACCAGGGAAACAACATGTACCTCTTTCCAGGgttagtt-------------------gacagtttcatactttattttatagtatacagttaatttttttttaaaatat-atctttttgttccag---------------

upper sequence: AT2G13560.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv15s0021g00500.t01 (Vitis vinifera), 5'ss of exon 15
GAAATGGTCATGTAGGACATTGCAACCAGGGAAACAACATGTATCTATTTCCAGGgttggttcctcttgtttattgtccgaaagaat-tgcatacattcttgaattgatacattaattgtcatgaaataaattgattttctaatcctgtaaaatttattgtag
||||||||||| | || |||||||||||||||||||| ||||| || ||||||||||  |||  |    ||     |   |  || | |  ||  |   || | ||  | | ||     |  |   ||   |    | |||  || || |             
GAAATGGTCATATTGGTCATTGCAACCAGGGAAACAATATGTACCTCTTTCCAGGgtcagtttttgcacttccacttagaagtgagtgttaatctaagtttcattt--ttccttgtaccttgttttatttttcacctgtctggtcatgcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453720|gb|EG496312.1|EG496312
EST:     GGTCATGTAGGACATTGCAACCAGGGAAACAACATGTATCTATTTCCAGG                         TATTGGACTTGGCACTCTTTTATCTGGTGCTCCCATTGTCTCCGACGGGAT
genomic: GGTCATGTAGGACATTGCAACCAGGGAAACAACATGTATCTATTTCCAGGgttggttcct ... tttattgtagTATTGGACTTGGCACTCTTTTATCTGGTGCTCCCATTGTCTCCGACGGGAT
EST: gi|125263801|gb|EL277886.1|EL277886
EST:     TGTATCTATTTCCAGG                         TATTGGACTTGGCACTCTTTTATCTGGTGCTCCCATTGTCTCCGACGGGAT
genomic: TGTATCTATTTCCAGGgttggttcct ... tttattgtagTATTGGACTTGGCACTCTTTTATCTGGTGCTCCCATTGTCTCCGACGGGAT
EST: gi|47828604|gb|CK118288.1|CK118288
EST:     GGTCATGTAGGACATTGCAACCAGGGAAACAACATGTATCTATTTCCAGG                         TATTGGACTTGGCAC
genomic: GGTCATGTAGGACATTGCAACCAGGGAAACAACATGTATCTATTTCCAGGgttggttcct ... tttattgtagTATTGGACTTGGCAC