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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTGCACATGAAACAGGAGAGGCTGCTCCGATACCTATCACAGTGAGACAACTCGAAGCTATTGTCAGACTGAGTGAGTCACTTGCAAAAATGAGACTgtaagtaatcttattaacatagagattcctgattcctgaaacctgatgggatgtgccgtccattgacattgttaaatatgtcag

Basic information

species Arabidopsis thaliana
transcript AT2G07690.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA17G11220.1 (Glycine max), 5'ss of exon 15
GACGTGCACATGAAACAGGAGAGGCTGCTCCGATACCTATCACAGTGAGACAACTCGAAGCTATTGTCAGACTGAGTGAGTCACTTGCAAAAATGAGACTgtaagtaatcttattaa-catagagattcctgattcctgaaacctgatgggat--gtgccgtccattgacattgt-taaatat-gtcag-----------
 ||  ||  ||||||| ||||| |||||  | ||||| || || ||||| || || ||||||||||| ||  |||||||| |||||||||| |||| |||||||||| |  | |||  | |    |  | |  | |||   | | ||     |  ||||  |    ||| |   | | ||||  |||||           
AACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATTACTGTGAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGGCACTTGCAAAGATGAAACTgtaagtattgctgttattctttattacactttgtaccttttatccgaaactcttagtgcaatttcatgaaaaaatatgaatacagtcagtgcctgcatgg

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA13G22420.1 (Glycine max), 5'ss of exon 15
GACGTGCACATGAAACAGGAGAGGCTGCTCCGATACCTATCACAGTGAGACAACTCGAAGCTATTGTCAGACTGAGTGAGTCACTTGCAAAAATGAGACTgtaagtaatc-ttattaacatagagattcctgattcctgaaacctgatgggat--gtgccgtccattgacattgtta-aatat-gtcag-----------
 ||  ||  ||||||| ||||| |||||  | ||||| || || ||||| ||  | ||||||||||| ||  |||||||| |||||||||| |||| |||||||||| |  || |   | | |     | || | |||   | | ||     |   |||  |    ||| |   | | ||||  ||| |           
AACAAGCGAATGAAACTGGAGAAGCTGCAGCAATACCAATTACTGTGAGGCAGTTGGAAGCTATTGTTAGGTTGAGTGAGGCACTTGCAAAGATGAAACTgtaagtattggttgtattctttgttgcacttggtaccttttatccgaaactcttgatgcaatttcatgaaaaaatgagaatacagtcggtgcctgcatgg

upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv11s0149g00130.t01 (Vitis vinifera), 5'ss of exon 15
GACGTGCACATGAAACAGGAGAGGCTGCTCCGATACCTATCACAGTGAGACAACTCGAAGCTATTGTCAGACTGAGTGAGTCACTTGCAAAAATGAGACTgtaagtaatcttattaacatagagattcc---tgattcctgaaacctgatgggatgtgccgtccattgacattgttaaatatgtcag---------------
  |  ||| ||||||| || ||||| ||| | ||||| || || || |||||||| |||||||| || ||  | |||||| |||||||||| ||||||||||||||| |  | |  |  | || | |     |  | | | |   || |||  |  |      ||   | ||    | |||  |                  
AGCAAGCAAATGAAACTGGGGAGGCAGCTGCCATACCAATTACTGTAAGACAACTAGAAGCTATCGTAAGGTTAAGTGAGGCACTTGCAAAGATGAGACTgtaagtactggtgtagaatttgacagtttgcatagtccttaattgctcatgaaa-ataatactcaa-aatatcaaaagataaattgattgatggcaagggtt