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ACTCTCGTCATGGCTCCGGTTTTCCTCTGAAAGTGAACCGTTACTTATCCATCCCGGCTTATTTACTCTCTTGCACATATACAAATAGAGAGGGAGAGAGgttggttataaaatgatttacatggattaatggtttttgtgtttcatttcatctgaataaatgagataattctgtttttgagtttagagacactctttaa...
species | Arabidopsis thaliana |
transcript | AT1G78920.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATCCCGGCTTATTTACTCTCTTGCACATATACAAATAGAGAGGGAGAGAG ACAATTGTCTACTCGGTAGTCTTATGAGACGGCGGTTGTTGCGATTGCTGCEST: gi|116404304|gb|EG446896.1|EG446896
genomic: ATCCCGGCTTATTTACTCTCTTGCACATATACAAATAGAGAGGGAGAGAGgttggttata ... actcgtacagACAATTGTCTACTCGGTAGTCTTATGAGACGGCGGTTGTTGCGATTGCTGC
EST: ATCCCGGCTTATTTACTCTCTTGCACATATACAAATAGAGAGGGAGAGAG ACAATTGTCTACTCGGTAGTCTTATGAGACGGCGGTTGTTGCGATTGCTGCEST: gi|124777741|gb|EH867684.1|EH867684
genomic: ATCCCGGCTTATTTACTCTCTTGCACATATACAAATAGAGAGGGAGAGAGgttggttata ... actcgtacagACAATTGTCTACTCGGTAGTCTTATGAGACGGCGGTTGTTGCGATTGCTGC
EST: TCCCGGCTTATTTACTCTCTTGCTACATATACAAATAGAGAGGGAGAGAG ACAATTGTCTACTCGGTAGTCTTATGAGACGGCGGTTGTTGCGA
genomic: TCCCGGCTTATTTACTCTCTTGC-ACATATACAAATAGAGAGGGAGAGAGgttggttata ... actcgtacagACAATTGTCTACTCGGTAGTCTTATGAGACGGCGGTTGTTGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCTCGTCATGGCTCCGGTTTTCCTCTGAAAGTGAACCGTTACTTATCCATCCCGGCTTATTTACTCTCTTGCACATATACAAATAGAGAGGGAGAGAGgttggttataaaatgatttacatggattaatggtttttgtgtttcatttcatctgaataaatgagataattctgtttttgagtttagagacactctttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa