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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCTGGGGTTTGGACAAAAAGCTTGCCCAGAGAAAACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaaatattctcggttcaaacttgtcttggtttactatctagaaatcttgtatataaaacgctgctttttgttttag

Basic information

species Arabidopsis thaliana
transcript AT1G78900.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 15
GTCTTCTGGGGTTTGGACAAAAAGCTTGCCCAGAGAAAACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatg-cttaaatattctcggttca-aacttgtcttggtttactatctagaaatcttgtatataaaacgct---gctttttgttttag------------------------------------
|| |||||||||||||||||||||||||| ||||| || || ||||| ||||| || ||| | |||||||| ||||| || ||||||||||| | ||||  |  |   ||   ||||  || |      || |||| |    ||||||  | |  | |   | |   ||  ||                                      
GTTTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAGCACTTTCCTTCTGTAAACTGGCTTATTTCTTATTCAAAATACTCAACGgtatgtcctaaagttggttactttgtaactcatcct--ccagctttctaca---tttgtatgcatagtgttttggttccatgactttccccgaatttttaatattttctttttggtatctttag

upper sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 15
GTCTTCTGGGGTTTGGACAAAAAGCTTGCCCAGAGAAAACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatg-cttaaatattctcggttcaaacttgtcttggtttactatctagaaatcttgtatataaaacgctgctttttgttttag-------------------------------------------
|| |||||||| ||||||||||||||||||||||| || || ||||| ||||| || ||| | |||||||| ||||| || ||||||||||| | | ||  |  |   ||   |      ||      || |||| |  |  | |  ||| |       |||| |||  |                                            
GTTTTCTGGGGGTTGGACAAAAAGCTTGCCCAGAGGAAGCACTTTCCTTCTGTAAACTGGCTTATTTCTTATTCAAAATACTCAACGgtatgtcctcaagttggttactttgtaaccccattctccagctttctacat-ttgtatgcatatagttagtgttttggttccatgactttcctgatttttttaatattttctttttggtatctttag

upper sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 15
GTCTTCTGGGGTTTGGACAAAAAGCTTGCCCAGAGAAAACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaaatattctcggttcaaacttgtcttggtttactatctagaaatcttgtatataaaacgctgctttttgtt--ttag------------------------------------
|| |||||||||||||||||||||||||| ||||| |||||||| || ||||| || ||| | ||||||||||| ||||| ||||| ||| | |    | |||         |  ||   | ||||  | | |||   | || ||| | ||   || ||     |   |||                                     
GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttcttctgttcaaacacaccagatgctattgttttttctttaggtgtattatatgttaacgccttctcaccatggattaatttcttaagctcacttattgctttgtacattttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116463760|gb|EG506352.1|EG506352
EST:     AACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACG                         GCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG
genomic: AACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaa ... tttgttttagGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG
EST: gi|164207249|gb|ES173179.1|ES173179
EST:     GGTTGATTTCTTACTCAAAGTATTCAACG                         GCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATT-CATCAACTATCAG
genomic: GGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaa ... tttgttttagGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAAC-ATCAG
EST: gi|125205657|gb|EL220611.1|EL220611
EST:     TTGATTTCTTACTCAAAGTATTCAACG                         GCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACAT
genomic: TTGATTTCTTACTCAAAGTATTCAACGgtatgcttaa ... tttgttttagGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACAT
EST: gi|124714832|gb|EH806234.1|EH806234
EST:     AACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACG                         GCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAAC
genomic: AACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaa ... tttgttttagGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAAC
EST: gi|125029639|gb|EL101908.1|EL101908
EST:     AACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACG                         GCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACA
genomic: AACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaa ... tttgttttagGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACA
EST: gi|116463788|gb|EG506380.1|EG506380
EST:     AACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACG                         GCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG
genomic: AACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaa ... tttgttttagGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG
EST: gi|164221485|gb|ES026185.1|ES026185
EST:     TTTTCCCTCTGTTAATTGGTTGTATTTCTTACTCAAAGTATTCAACG                         GCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG
genomic: TTTTCCCTCTGTTAATTGGTTG-ATTTCTTACTCAAAGTATTCAACGgtatgcttaa ... tttgttttagGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG
EST: gi|164215890|gb|ES029981.1|ES029981
EST:     TTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACG                         GCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG
genomic: TTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaa ... tttgttttagGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG
EST: gi|164064910|gb|ES011546.1|ES011546
EST:     TTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACG                         GCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG
genomic: TTTTCCCTCTGTTAATTGGTTGATTTCTTACTCAAAGTATTCAACGgtatgcttaa ... tttgttttagGCACTGGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACATCAGG